Class: Bio::BioAlignment::Element

Inherits:

Object

• Object
• Bio::BioAlignment::Element

Includes:

State

Defined in:

lib/bio-alignment/elements.rb

Overview

Simple element that can be queried

Constant Summary

GAP =

'-'

UNDEFINED =

'X'

Instance Attribute Summary

Attributes included from State

#state

Instance Method Summary

• #==(other) ⇒ Object
• #gap? ⇒ Boolean
• #initialize(c) ⇒ Element constructor

  A new instance of Element.

• #to_s ⇒ Object
• #undefined? ⇒ Boolean

Constructor Details

#initialize(c) ⇒ Element

Returns a new instance of Element.

# File 'lib/bio-alignment/elements.rb', line 11

def initialize c
  @c = c
end

Instance Method Details

#==(other) ⇒ Object

# File 'lib/bio-alignment/elements.rb', line 23

def == other
  to_s == other.to_s
end

#gap? ⇒ Boolean

Returns:

• (Boolean)

# File 'lib/bio-alignment/elements.rb', line 14

def gap?
  @c == GAP
end

#to_s ⇒ Object

# File 'lib/bio-alignment/elements.rb', line 20

def to_s
  @c
end

#undefined? ⇒ Boolean

Returns:

• (Boolean)

# File 'lib/bio-alignment/elements.rb', line 17

def undefined?
  @c == 'X'
end