Class: BELParser::Language::Semantics::SemanticsInvalidAminoAcidWarning

Inherits:
SemanticsWarning show all
Defined in:
lib/bel_parser/language/semantics_ast_warnings.rb

Instance Attribute Summary

Attributes inherited from SemanticsResult

#expression_node, #specification

Instance Method Summary collapse

Methods inherited from SemanticsWarning

#failure?, #success?

Methods inherited from SemanticsResult

#failure?, #msg, #success?

Constructor Details

#initialize(expression_node, spec, expected_amino_acids) ⇒ SemanticsInvalidAminoAcidWarning

Returns a new instance of SemanticsInvalidAminoAcidWarning.



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# File 'lib/bel_parser/language/semantics_ast_warnings.rb', line 146

def initialize(expression_node, spec, expected_amino_acids)
  super(expression_node, spec)
  @expected_amino_acids = expected_amino_acids
end

Instance Method Details

#to_s ⇒ Object 



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# File 'lib/bel_parser/language/semantics_ast_warnings.rb', line 151

def to_s
  amino_acid = @expression_node.children[0].string_literal
  %(Amino acid of "#{amino_acid}" does not match allowed amino acids: #{@expected_amino_acids.join(', ')})
end