Class List
Search:
- BioTop Level Namespace
- AssemblyBio
- ABVisualiser < ObjectBio::Assembly
- SimplifiedGraph < ObjectBio::Assembly::ABVisualiser
- Path < ObjectBio::Assembly::ABVisualiser::SimplifiedGraph
- AcyclicConnectionFinder < ObjectBio::AssemblyGraphAlgorithms
- AllOrfsFinder < ObjectBio::AssemblyGraphAlgorithms
- AllProblemTrailsFinder < ObjectBio::AssemblyGraphAlgorithms::AllOrfsFinder
- Marker < ObjectBio::AssemblyGraphAlgorithms::AllOrfsFinder
- ORFsResult < ObjectBio::AssemblyGraphAlgorithms::AllOrfsFinder
- ORFsTracingTrail < ObjectBio::AssemblyGraphAlgorithms::AllOrfsFinder
- SearchResult < ObjectBio::AssemblyGraphAlgorithms::AllOrfsFinder
- BamProbeReadSelector < ObjectBio::AssemblyGraphAlgorithms
- BubblyAssembler < SingleEndedAssemblerBio::AssemblyGraphAlgorithms
- Bubble < ObjectBio::AssemblyGraphAlgorithms::BubblyAssembler
- CircuitousPathDetected < ExceptionBio::AssemblyGraphAlgorithms::BubblyAssembler
- ComparableArray < ArrayBio::AssemblyGraphAlgorithms::BubblyAssembler
- DynamicProgrammingProblem < ObjectBio::AssemblyGraphAlgorithms::BubblyAssembler
- MetaPath < ObjectBio::AssemblyGraphAlgorithms::BubblyAssembler
- ConnectivityBasedGraphFilter < ObjectBio::AssemblyGraphAlgorithms
- ContigPrinter < ObjectBio::AssemblyGraphAlgorithms
- AnchoredConnection < ObjectBio::AssemblyGraphAlgorithms::ContigPrinter
- PrintableConnection < ObjectBio::AssemblyGraphAlgorithms::ContigPrinter
- Variant < ObjectBio::AssemblyGraphAlgorithms::ContigPrinter
- CoverageBasedGraphFilter < ObjectBio::AssemblyGraphAlgorithms
- Dijkstra < ObjectBio::AssemblyGraphAlgorithms
- DistancedOrientedNode < ObjectBio::AssemblyGraphAlgorithms::Dijkstra
- Fluffer < ObjectBio::AssemblyGraphAlgorithms
- FlufferHalfResult < ObjectBio::AssemblyGraphAlgorithms::Fluffer
- FlufferPathSet < ArrayBio::AssemblyGraphAlgorithms::Fluffer
- GraphExplorer < ObjectBio::AssemblyGraphAlgorithms
- ExplorationPath < ObjectBio::AssemblyGraphAlgorithms::GraphExplorer
- GraphWalkingException < ExceptionBio::AssemblyGraphAlgorithms
- HeightFinder < ObjectBio::AssemblyGraphAlgorithms
- CyclicTraversalNode < TraversalNodeBio::AssemblyGraphAlgorithms::HeightFinder
- CyclePath < ObjectBio::AssemblyGraphAlgorithms::HeightFinder::CyclicTraversalNode
- TraversalNode < ObjectBio::AssemblyGraphAlgorithms::HeightFinder
- KmerCoverageBasedPathFilter < ObjectBio::AssemblyGraphAlgorithms
- LazyGraphWalker < ObjectBio::AssemblyGraphAlgorithms
- NodeFinder < ObjectBio::AssemblyGraphAlgorithms
- PairedEndAssembler < SingleEndedAssemblerBio::AssemblyGraphAlgorithms
- SequenceHasher < ObjectBio::AssemblyGraphAlgorithms
- DistancedOrientedNodeTrail < OrientedNodeTrailBio::AssemblyGraphAlgorithms::SequenceHasher
- SingleCoherentPathsBetweenNodesFinder < ObjectBio::AssemblyGraphAlgorithms
- CycleCounter < ObjectBio::AssemblyGraphAlgorithms::SingleCoherentPathsBetweenNodesFinder
- DualStack < ObjectBio::AssemblyGraphAlgorithms::SingleCoherentPathsBetweenNodesFinder
- DynamicProgrammingProblem < ObjectBio::AssemblyGraphAlgorithms::SingleCoherentPathsBetweenNodesFinder
- ProblemSet < HashBio::AssemblyGraphAlgorithms::SingleCoherentPathsBetweenNodesFinder
- ProblemTrailFinder < ObjectBio::AssemblyGraphAlgorithms::SingleCoherentPathsBetweenNodesFinder
- SingleCoherentWanderer < ObjectBio::AssemblyGraphAlgorithms
- DistancedOrientedNodeSet < ObjectBio::AssemblyGraphAlgorithms::SingleCoherentWanderer
- SingleEndedAssembler < ObjectBio::AssemblyGraphAlgorithms
- MaxDistancedOrientedNode < ObjectBio::AssemblyGraphAlgorithms::SingleEndedAssembler
- TrailSet < ObjectBio::AssemblyGraphAlgorithms
- FinishMBio
- Assembler < ObjectBio::FinishM
- BadFormatWriter < ObjectBio::FinishM
- CProbeNodeFinder < ObjectBio::FinishM
- ConnectionInterpreter < ObjectBio::FinishM
- Connection < ObjectBio::FinishM::ConnectionInterpreter
- PossiblyCircularArray < ArrayBio::FinishM::ConnectionInterpreter
- Probe < ObjectBio::FinishM::ConnectionInterpreter
- Scaffold < ObjectBio::FinishM::ConnectionInterpreter
- UnscaffoldedContig < ObjectBio::FinishM::ConnectionInterpreter
- Explorer < ObjectBio::FinishM
- InterestingPlace < ObjectBio::FinishM::Explorer
- Finisher < ObjectBio::FinishM
- Fluff < ObjectBio::FinishM
- GapFiller < ObjectBio::FinishM
- GraphGenerator < ObjectBio::FinishM
- HybridGraph < GraphBio::FinishM
- LazyShortReadArray < ObjectBio::FinishM::HybridGraph
- NodeArray < ObjectBio::FinishM::HybridGraph
- InputGenome < ObjectBio::FinishM
- LoggingBio::FinishM
- ORFsFinder < ObjectBio::FinishM
- PairedEndNeighbourFinder < ObjectBio::FinishM
- Neighbour < OrientedNodeBio::FinishM::PairedEndNeighbourFinder
- PathCounter < ObjectBio::FinishM
- Primers < ObjectBio::FinishM
- Checker < ObjectBio::FinishM::Primers
- PrimerList < ObjectBio::FinishM::Primers
- ProbedGraph < ObjectBio::FinishM
- ReadInput < ObjectBio::FinishM
- ReadToNode < ObjectBio::FinishM
- RoundUp < ObjectBio::FinishM
- ScaffoldBreaker < ObjectBio::FinishM
- Gap < ObjectBio::FinishM::ScaffoldBreaker
- Scaffold < ObjectBio::FinishM::ScaffoldBreaker
- UnscaffoldedContig < ObjectBio::FinishM::ScaffoldBreaker
- Sequence < ObjectBio::FinishM
- PathSteppingStone < ObjectBio::FinishM::Sequence
- VelvetCBinding < ObjectBio::FinishM
- ReadIdNodeIdStruct < StructBio::FinishM::VelvetCBinding
- ReadIdToNodeIdIndexationStruct < StructBio::FinishM::VelvetCBinding
- ReadIdToNodeIdLookupTableStruct < StructBio::FinishM::VelvetCBinding
- Visualise < ObjectBio::FinishM
- Wanderer < ObjectBio::FinishM
- KmerMultipleAbundanceHash < HashBio
- VelvetBio
- Graph < ObjectBio::Velvet
- Node < ObjectBio::Velvet::Graph
- NodedRead < ObjectBio::Velvet::Graph
- OrientedNodeTrail < ObjectBio::Velvet::Graph
- IllDefinedTrailDefinition < ExceptionBio::Velvet::Graph::OrientedNodeTrail
- InsufficientLengthException < ExceptionBio::Velvet::Graph::OrientedNodeTrail
- OrientedNode < ObjectBio::Velvet::Graph::OrientedNodeTrail
- DS::AnyPriorityQueue < PriorityQueueDS
- KmerAbundancePattern < ArrayTop Level Namespace
- NumberedProbe < ObjectTop Level Namespace
- OligoDesigner < ObjectTop Level Namespace
- Oligo < ObjectOligoDesigner