Class List
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- BioroebeTop Level Namespace
- AdvancedDotplot < CommandlineApplicationBioroebe
- AlignOpenReadingFrames < CommandlineApplicationBioroebe
- Alignment < CommandlineApplicationBioroebe
- AlphaHelix < CommandlineApplicationBioroebe
- AminoacidSubstitution < CommandlineApplicationBioroebe
- AminoacidsMassTable < BaseBioroebe
- AnalyseGlycosylationPattern < CommandlineApplicationBioroebe
- AnalyseLocalDataset < CommandlineApplicationBioroebe
- AutocorrectTheNameOfThisFastaFile < CommandlineApplicationBioroebe
- Base < ObjectBioroebe
- BaseModuleBioroebe
- BiolangParser < CommandlineApplicationBioroebe
- BiomartBioroebe
- ArgumentError < BiomartErrorBioroebe::Biomart
- Attribute < ObjectBioroebe::Biomart
- AttributeError < BiomartErrorBioroebe::Biomart
- BiomartError < StandardErrorBioroebe::Biomart
- Database < ObjectBioroebe::Biomart
- Dataset < ObjectBioroebe::Biomart
- DatasetError < BiomartErrorBioroebe::Biomart
- Filter < ObjectBioroebe::Biomart
- FilterError < BiomartErrorBioroebe::Biomart
- HTTPError < BiomartErrorBioroebe::Biomart
- Server < ObjectBioroebe::Biomart
- BlosumBioroebe
- BlosumParser < CommandlineApplicationBioroebe
- CalculateBlosumScore < CommandlineApplicationBioroebe
- CalculateGCContent < CommandlineApplicationBioroebe
- CalculateMeltingTemperature < CommandlineApplicationBioroebe
- CalculateMeltingTemperatureForMoreThanThirteenNucleotides < CommandlineApplicationBioroebe
- CalculateThePositionSpecificScoringMatrix < CommandlineApplicationBioroebe
- Cell < CommandlineApplicationBioroebe
- CheckForMismatches < CommandlineApplicationBioroebe
- CodonPercentage < CommandlineApplicationBioroebe
- CodonTableBioroebe
- CodonTablesBioroebe
- CodonTablesFrequenciesBioroebe
- ColourSchemeBioroebe
- Buried < ScoreBioroebe::ColourScheme
- Consensus < ObjectBioroebe::ColourScheme
- Helix < ScoreBioroebe::ColourScheme
- Nucleotide < SimpleBioroebe::ColourScheme::Helix
- Hydropathy < ScoreBioroebe::ColourScheme
- Score < ObjectBioroebe::ColourScheme
- Simple < ObjectBioroebe::ColourScheme
- Strand < ScoreBioroebe::ColourScheme
- Taylor < SimpleBioroebe::ColourScheme
- Turn < ScoreBioroebe::ColourScheme
- Zappo < SimpleBioroebe::ColourScheme
- ColourSchemeDemo < BaseBioroebe
- ColourizeBioroebe
- ColourizeHydrophilicAndHydrophobicAminoacids < BaseBioroebe
- ColourizeSequence < BaseBioroebe
- ColoursForBaseBioroebe
- CommandlineApplication < BaseBioroebe
- CommandlineArgumentsBioroebe
- CompactFastaFile < CommandlineApplicationBioroebe
- Compacter < CommandlineApplicationBioroebe
- CompareTheseTwoSequencesViaBlosum < CommandlineApplicationBioroebe
- ComplementaryDnaStrand < CommandlineApplicationBioroebe
- Compseq < CommandlineApplicationBioroebe
- ConfigurationBioroebe
- ConsensusSequence < CommandlineApplicationBioroebe
- ConvertAminoacidToDNA < CommandlineApplicationBioroebe
- ConvertThisCodonToThatAminoacid < CommandlineApplicationBioroebe
- CountAmountOfAminoacids < CommandlineApplicationBioroebe
- CountAmountOfNucleotides < CommandlineApplicationBioroebe
- CreateAnnotationFormat < CommandlineApplicationBioroebe
- CreateBatchEntrezFile < CommandlineApplicationBioroebe
- CreateRandomAminoacids < CommandlineApplicationBioroebe
- DNA < SequenceBioroebe
- DeduceAminoacidSequence < CommandlineApplicationBioroebe
- DetectMinimalCodon < BaseBioroebe
- DetermineAntigenicAreas < CommandlineApplicationBioroebe
- DetermineMissingNucleotidesPercentage < CommandlineApplicationBioroebe
- DetermineOptimalCodons < CommandlineApplicationBioroebe
- Digestion < CommandlineApplicationBioroebe
- DisplayAminoacidTable < CommandlineApplicationBioroebe
- DisplayHowManyFastaEntriesAreInThisDirectory < CommandlineApplicationBioroebe
- DisplayOpenReadingFrames < CommandlineApplicationBioroebe
- DnaToAminoacidSequence < CommandlineApplicationBioroebe
- DotAlignment < CommandlineApplicationBioroebe
- Dotplot < BaseBioroebe
- DownloadFasta < CommandlineApplicationBioroebe
- DownloadFilesFromRebase < CommandlineApplicationBioroebe
- DownloadTaxonomyDatabase < CommandlineApplicationBioroebe
- ElectronMicroscopyBioroebe
- CoordinateAnalyzer < CommandlineApplicationBioroebe::ElectronMicroscopy
- FixPosFile < CommandlineApplicationBioroebe::ElectronMicroscopy
- FlipY < CommandlineApplicationBioroebe::ElectronMicroscopy
- GenerateEm2emFile < CommandlineApplicationBioroebe::ElectronMicroscopy
- ParseCoordinates < CommandlineApplicationBioroebe::ElectronMicroscopy
- ReadFileXMD < CommandlineApplicationBioroebe::ElectronMicroscopy
- SimpleStarFileGenerator < CommandlineApplicationBioroebe::ElectronMicroscopy
- EmbeddableInterfaceBioroebe
- FastaDefline < CommandlineApplicationBioroebe
- FastaParser < BaseBioroebe
- FastaToYaml < CommandlineApplicationBioroebe
- FastqFormatExplainer < CommandlineApplicationBioroebe
- FeaturesBioroebe
- FetchDataFromUniprot < CommandlineApplicationBioroebe
- FetchFastaSequenceFromPdb < CommandlineApplicationBioroebe
- FindGene < CommandlineApplicationBioroebe
- FindLongestSubstring < CommandlineApplicationBioroebe
- FindLongestSubstringViaLCSalgorithm < CommandlineApplicationBioroebe
- GUIBioroebe
- AlignmentModuleBioroebe::GUI
- AminoacidCompositionModuleBioroebe::GUI
- AntiSenseStrand < ObjectBioroebe::GUI
- BlosumMatrixViewerModuleBioroebe::GUI
- CalculateCellNumbersOfBacteriaModuleBioroebe::GUI
- DnaToReverseComplementWidgetModuleBioroebe::GUI
- GtkBioroebe::GUI
- Alignment < BaseModuleBoxBioroebe::GUI::Gtk
- AminoacidComposition < BoxBioroebe::GUI::Gtk
- AntiSenseStrand < BoxBioroebe::GUI::Gtk
- BlosumMatrixViewer < BoxBioroebe::GUI::Gtk
- CalculateCellNumbersOfBacteria < BoxBioroebe::GUI::Gtk
- Controller < BoxBioroebe::GUI::Gtk
- CustomizedDialog < DialogBioroebe::GUI::Gtk
- DnaToAminoacidWidget < BoxBioroebe::GUI::Gtk
- DnaToReverseComplementWidget < BoxBioroebe::GUI::Gtk
- FastaTableWidget < FrameBioroebe::GUI::Gtk
- FormatConverter < BoxBioroebe::GUI::Gtk
- Gene < BoxBioroebe::GUI::Gtk
- HammingDistance < BoxBioroebe::GUI::Gtk
- LevenstheinDistance < BoxBioroebe::GUI::Gtk
- NucleotideAnalyser < BoxBioroebe::GUI::Gtk
- ParsePdbFile < FrameBioroebe::GUI::Gtk
- PrimerDesignWidget < BoxBioroebe::GUI::Gtk
- ProteinToDNA < BaseModuleBoxBioroebe::GUI::Gtk
- RandomSequence < BoxBioroebe::GUI::Gtk
- RestrictionEnzymes < BoxBioroebe::GUI::Gtk
- Shell < BaseModuleBoxBioroebe::GUI::Gtk
- ShowCodonTable < BaseModuleBoxBioroebe::GUI::Gtk
- ShowCodonUsage < BoxBioroebe::GUI::Gtk
- Sizeseq < BoxBioroebe::GUI::Gtk
- Snapgene < BaseModuleBoxBioroebe::GUI::Gtk
- ThreeToOne < BoxBioroebe::GUI::Gtk
- ThreeToOneModuleBioroebe::GUI::Gtk
- WwwFinder < BoxBioroebe::GUI::Gtk
- JrubyBioroebe::GUI
- Alignment < JFrameBioroebe::GUI::Jruby
- AminoacidComposition < JFrameBioroebe::GUI::Jruby
- LevenstheinDistanceModuleBioroebe::GUI
- LibUIBioroebe::GUI
- AlignmentBioroebe::GUI::LibUI
- BlosumMatrixViewerBioroebe::GUI::LibUI
- CalculateCellNumbersOfBacteria < ObjectBioroebe::GUI::LibUI
- DnaToAminoacidWidgetBioroebe::GUI::LibUI
- DnaToReverseComplementWidget < ObjectBioroebe::GUI::LibUI
- HammingDistanceBioroebe::GUI::LibUI
- LevenstheinDistance < ObjectBioroebe::GUI::LibUI
- ProteinToDNA < ObjectBioroebe::GUI::LibUI
- RandomSequenceBioroebe::GUI::LibUI
- ShowCodonTableBioroebe::GUI::LibUI
- ShowCodonUsage < ObjectBioroebe::GUI::LibUI
- ThreeToOneBioroebe::GUI::LibUI
- ProteinToDNAModuleBioroebe::GUI
- Shell < JFrameBioroebe::GUI
- ShellModuleBioroebe::GUI
- ShowCodonTableModuleBioroebe::GUI
- ShowCodonUsageModuleBioroebe::GUI
- TkBioroebe::GUI
- AminoacidComposition < ObjectBioroebe::GUI::Tk
- BlosumMatrixViewer < ObjectBioroebe::GUI::Tk
- HammingDistance < BaseBioroebe::GUI::Tk
- LevenstheinDistance < BaseBioroebe::GUI::Tk
- ThreeToOne < ObjectBioroebe::GUI::Tk
- GenbankFlatFileFormatGenerator < CommandlineApplicationBioroebe
- GenbankParser < CommandlineApplicationBioroebe
- Gene < SequenceBioroebe
- Genome < CommandlineApplicationBioroebe
- GenomePattern < CommandlineApplicationBioroebe
- GenomeRetriever < CommandlineApplicationBioroebe
- HammingDistance < CommandlineApplicationBioroebe
- HelixWheel < CommandlineApplicationBioroebe
- InferTheNamespaceModuleBioroebe
- InternalHashModuleBioroebe
- InvalidAminoacid < StandardErrorBioroebe
- LengthModifier < CommandlineApplicationBioroebe
- Levensthein < CommandlineApplicationBioroebe
- MatplotlibGenerator < CommandlineApplicationBioroebe
- Matrix < ObjectBioroebe
- MirrorRepeat < CommandlineApplicationBioroebe
- MolecularWeightOfNucleotidesBioroebe
- MostLikelyNucleotideSequenceForThisAminoacidSequence < CommandlineApplicationBioroebe
- MoveFileToItsCorrectLocation < CommandlineApplicationBioroebe
- Ncbi < BaseBioroebe
- NucleotideModuleBioroebe
- Palindrome2DStructure < CommandlineApplicationBioroebe
- PalindromeFinder < CommandlineApplicationBioroebe
- PalindromeGenerator < CommandlineApplicationBioroebe
- ParseEMBL < CommandlineApplicationBioroebe
- ParseFasta < CommandlineApplicationBioroebe
- ParseFastq < CommandlineApplicationBioroebe
- ParseFrequencyTable < CommandlineApplicationBioroebe
- ParsePdbFile < CommandlineApplicationBioroebe
- ParseTaxonomy < CommandlineApplicationBioroebe
- ParsemmCIFFile < CommandlineApplicationBioroebe
- ParserBioroebe
- GFF < CommandlineApplicationBioroebe::Parser
- Pathways < CommandlineApplicationBioroebe
- Permutations < CommandlineApplicationBioroebe
- PhredQualityScoreTable < CommandlineApplicationBioroebe
- PossibleCodonsForThisAminoacid < CommandlineApplicationBioroebe
- PostgresqlBioroebe
- ProfilePattern < CommandlineApplicationBioroebe
- Protein < SequenceBioroebe
- Punnet < CommandlineApplicationBioroebe
- QuizBioroebe
- ThreeLetterToAminoacid < CommandlineApplicationBioroebe::Quiz
- RGG_Scanner < CommandlineApplicationBioroebe
- RNA < SequenceBioroebe
- RNALfoldWrapper < CommandlineApplicationBioroebe
- RawSequence < ObjectBioroebe
- ReportSecondaryStructuresFromThisPdbFile < CommandlineApplicationBioroebe
- RestrictionEnzyme < CommandlineApplicationBioroebe
- RestrictionEnzymesBioroebe
- StatisticsBioroebe::RestrictionEnzymes
- ReverseComplement < SequenceBioroebe
- Ruler < CommandlineApplicationBioroebe
- SVG < ObjectBioroebe
- SanitizeCodonFrequency < BaseBioroebe
- SanitizeNucleotideSequence < BaseBioroebe
- ScanForRepeat < CommandlineApplicationBioroebe
- Sequence < RawSequenceBioroebe
- Shell < CommandlineApplicationBioroebe
- Help < CommandlineApplicationBioroebe::Shell
- ShowCodonTables < CommandlineApplicationBioroebe
- ShowCodonUsage < CommandlineApplicationBioroebe
- ShowFastaHeaders < CommandlineApplicationBioroebe
- ShowFastaStatistics < CommandlineApplicationBioroebe
- ShowHydrophobicity < CommandlineApplicationBioroebe
- ShowNucleotideSequence < SequenceBioroebe
- ShowOrf < CommandlineApplicationBioroebe
- ShowRestrictionEnzymes < CommandlineApplicationBioroebe
- ShowThisCodonTable < CommandlineApplicationBioroebe
- ShowThisDNASequence < CommandlineApplicationBioroebe
- SiRNA < ObjectBioroebe
- SimpleStringComparer < CommandlineApplicationBioroebe
- SimplifyFastaHeader < CommandlineApplicationBioroebe
- Sinatra < BaseBioroebe
- SmithWaterman < ObjectBioroebe
- SplitThisFastaFileIntoChromosomes < CommandlineApplicationBioroebe
- StrideParser < CommandlineApplicationBioroebe
- TaxonomyBioroebe
- Chart < CommandlineApplicationBioroebe::Taxonomy
- CheckAvailable < ObjectBioroebe::Taxonomy
- ConstantsBioroebe::Taxonomy
- Helpline < ObjectBioroebe::Taxonomy
- Info < CommandlineApplicationBioroebe::Taxonomy
- Interactive < CommandlineApplicationBioroebe::Taxonomy
- IsDNA < ObjectBioroebe::Taxonomy
- Node < CommandlineApplicationBioroebe::Taxonomy
- ParseFasta < CommandlineApplicationBioroebe::Taxonomy
- Trypsin < DigestionBioroebe
- UsefulFormulas < CommandlineApplicationBioroebe
- VerboseTruthBioroebe
- LibuiParadiseTop Level Namespace