Class: Bio::PDB::Record::Jrnl

Inherits:
Bio::PDB::Record show all
Defined in:
lib/bio/db/pdb/pdb.rb

Overview

JRNL record classes

Constant Summary collapse

AUTH =

subrecord of JRNL 13, 16 JRNL AUTH record class

def_rec([ 13, 16, Pdb_String,       :sub_record ], # "AUTH"
[ 17, 18, Pdb_Continuation, nil ],
[ 20, 70, Pdb_List,         :authorList ]
)
TITL =

JRNL TITL record class

def_rec([ 13, 16, Pdb_String,       :sub_record ], # "TITL"
[ 17, 18, Pdb_Continuation, nil ],
[ 20, 70, Pdb_LString,      :title ]
)
EDIT =

JRNL EDIT record class

def_rec([ 13, 16, Pdb_String,       :sub_record ], # "EDIT"
[ 17, 18, Pdb_Continuation, nil ],
[ 20, 70, Pdb_List,         :editorList ]
)
REF =

JRNL REF record class

def_rec([ 13, 16, Pdb_String,       :sub_record ], # "REF"
[ 17, 18, Pdb_Continuation, nil ],
[ 20, 47, Pdb_LString,      :pubName ],
[ 50, 51, Pdb_LString(2),   "V." ],
[ 52, 55, Pdb_String,       :volume ],
[ 57, 61, Pdb_String,       :page ],
[ 63, 66, Pdb_Integer,      :year ]
)
PUBL =

JRNL PUBL record class

def_rec([ 13, 16, Pdb_String,       :sub_record ], # "PUBL"
[ 17, 18, Pdb_Continuation, nil ],
[ 20, 70, Pdb_LString,      :pub ]
)
REFN =

JRNL REFN record class

def_rec([ 13, 16, Pdb_String,     :sub_record ], # "REFN"
[ 20, 23, Pdb_LString(4), "ASTM" ], 
[ 25, 30, Pdb_LString(6), :astm ],
[ 33, 34, Pdb_LString(2), :country ],
[ 36, 39, Pdb_LString(4), :BorS ], # "ISBN" or "ISSN"
[ 41, 65, Pdb_LString,    :isbn ],
[ 67, 70, Pdb_LString(4), :coden ] # "0353" for unpublished
)
Default =

default or unknown record

def_rec([ 13, 16, Pdb_String, :sub_record ])
Definition =

definitions (hash)

create_definition_hash

Constants inherited from Bio::PDB::Record

ANISOU, ATOM, AUTHOR, CAVEAT, CISPEP, COMPND, CONECT, CRYST1, DBREF, ENDMDL, EXPDTA, End, FORMUL, HEADER, HELIX, HET, HETATM, HETNAM, HETSYN, HYDBND, JRNL, KEYWDS, LINK, MASTER, MODEL, MODRES, MTRIX1, MTRIX2, MTRIX3, OBSLTE, ORIGX1, ORIGX2, ORIGX3, REMARK, REVDAT, RemarkN, SCALE1, SCALE2, SCALE3, SEQADV, SEQRES, SHEET, SIGATM, SIGUIJ, SITE, SLTBRG, SOURCE, SPRSDE, SSBOND, TER, TITLE, TURN, TVECT

Constants included from DataType

DataType::Pdb_AChar, DataType::Pdb_Atom, DataType::Pdb_Character, DataType::Pdb_Continuation, DataType::Pdb_Date, DataType::Pdb_IDcode, DataType::Pdb_Residue_name, DataType::Pdb_SymOP

Method Summary

Methods inherited from Bio::PDB::Record

#add_continuation, continue?, #continue?, create_definition_hash, def_rec, #do_parse, #each_symbol, get_record_class, #initialize_from_string, #inspect, new_direct, new_inherit, #original_data, #record_name, symbols

Methods included from DataType::ConstLikeMethod

#Pdb_LString, #Pdb_Real, #Pdb_String