Class: Queries::CollectingEvent::Filter

Inherits:
Query::Filter show all
Includes:
Queries::Concerns::Attributes, Queries::Concerns::Citations, Queries::Concerns::DataAttributes, Queries::Concerns::DateRanges, Queries::Concerns::Depictions, Queries::Concerns::Notes, Queries::Concerns::Protocols, Queries::Concerns::Tags, Helpers
Defined in:
lib/queries/collecting_event/filter.rb

Constant Summary collapse

ATTRIBUTES =

Params exists for all CollectingEvent attributes except these. geographic_area_id is excluded because we handle it specially in conjunction with ‘geographic_area_mode“ Definition must preceed include.

(::CollectingEvent.core_attributes - %w{geographic_area_id} + %w(cached_level0_geographic_name cached_level1_geographic_name cached_level2_geographic_name)).map(&:to_sym).freeze
BASE_PARAMS =

This list of params are those that only occur in this CollectingEvent filter. For those that overlap other filters place in PARAMS.

Used to define a base collecting query for CollectionObject filters scope, this is still used in CollectionObject query. This is “necessary” so that we can use CollectingEvent referencing facets in the CollectionObject filter for convienience.

[
  *Queries::Concerns::Attributes.params,
  *ATTRIBUTES,
  :collectors,
  :collecting_event_object_id,
  :collection_objects,
  :collector_id,
  :collector_id_or,
  :collecting_event_id,
  :determiner_name_regex,
  :geo_json,
  :geographic_area,
  :geographic_area_id,
  :geographic_area_mode,
  :georeferences,
  :in_labels,
  :md5_verbatim_label,
  :radius,
  :use_max,
  :use_min,
  :wkt,
  collecting_event_id: [],
  collector_id: [],
  geographic_area_id: [],
].inject([{}]){|ary, k| k.is_a?(Hash) ? ary.last.merge!(k) : ary.unshift(k); ary}.freeze
PARAMS = 
[
  *BASE_PARAMS,
  :otu_id,
  :collection_object_id,
  collection_object_id: [],
  otu_id: [],
].inject([{}]){|ary, k| k.is_a?(Hash) ? ary.last.merge!(k) : ary.unshift(k); ary}.freeze

Constants inherited from Query::Filter

Query::Filter::FILTER_QUERIES, Query::Filter::SUBQUERIES

Instance Attribute Summary collapse

Attributes inherited from Query::Filter

#api, #asserted_distribution_query, #biological_association_query, #biological_associations_graph_query, #collecting_event_query, #collection_object_query, #content_query, #controlled_vocabulary_term_query, #data_attribute_query, #descriptor_query, #extract_query, #image_query, #loan_query, #object_global_id, #observation_query, #otu_query, #page, #paginate, #params, #per, #person_query, #project_id, #recent, #taxon_name_query

Attributes inherited from Query

#query_string, #terms

Class Method Summary collapse

Instance Method Summary collapse

Methods included from Helpers

#boolean_param

Methods inherited from Query::Filter

#all, #all_and_clauses, #all_merge_clauses, #annotator_and_clauses, #annotator_merge_clauses, annotator_params, api_except_params, api_excluded_params, #attribute_exact_facet, #deep_permit, included_annotator_facets, inverted_subqueries, #model_id_facet, #object_global_id_facet, params, #permitted_params, #project_id_facet, #set_nested_queries, #shared_and_clauses, #subquery_vector

Methods inherited from Query

#alphabetic_strings, #alphanumeric_strings, base_name, #base_name, #base_query, #build_terms, #cached_facet, #end_wildcard, #levenshtein_distance, #match_ordered_wildcard_pieces_in_cached, #no_terms?, #referenced_klass, referenced_klass, #referenced_klass_except, #referenced_klass_intersection, #referenced_klass_union, #start_and_end_wildcard, #start_wildcard, #table, #wildcard_pieces

Constructor Details

#initialize(query_params) ⇒ Filter

Returns a new instance of Filter.



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# File 'lib/queries/collecting_event/filter.rb', line 149

def initialize(query_params)
  super

  @collectors = boolean_param(params, :collectors )
  @collecting_event_id = params[:collecting_event_id]
  @collection_object_id = params[:collection_object_id]
  @collection_objects = boolean_param(params, :collection_objects )
  @collector_id = params[:collector_id]
  @collector_id_or = boolean_param(params, :collector_id_or )
  @geo_json = params[:geo_json]
  @geographic_area = boolean_param(params, :geographic_area)
  @geographic_area_id = params[:geographic_area_id]
  @geographic_area_mode = boolean_param(params, :geographic_area_mode)
  @georeferences = boolean_param(params, :georeferences)
  @in_labels = params[:in_labels]
  @md5_verbatim_label = params[:md5_verbatim_label]&.to_s&.downcase == 'true'
  @otu_id = params[:otu_id].presence
  @radius = params[:radius].presence || 100.0
  @use_max = params[:use_max]
  @use_min = params[:use_min]
  @wkt = params[:wkt]

  set_attributes_params(params)
  set_citations_params(params)
  set_data_attributes_params(params)
  set_date_params(params)
  set_depiction_params(params)
  set_notes_params(params)
  set_protocols_params(params)
  set_tags_params(params)
end

Instance Attribute Details

#collecting_event_id ⇒ Object

Parameters:

  • collecting_event_id (Array, Integer, nil) —

    One or more collecting_event_id



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# File 'lib/queries/collecting_event/filter.rb', line 78

def collecting_event_id
  @collecting_event_id
end

#collection_object_id ⇒ Object

Returns Array.

Parameters:

  • collection_object_id (Array, Integer, String) —

    all collecting events matching collection objects

Returns:

  • Array



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# File 'lib/queries/collecting_event/filter.rb', line 123

def collection_object_id
  @collection_object_id
end

#collection_objects ⇒ Object

Parameters:

  • collection_objects (String, nil) —

    legal values are ‘true’, ‘false’ ‘true` - match only CollectingEvents with associated CollectionObjects `false` - match only CollectingEvents without associated CollectionObjects



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# File 'lib/queries/collecting_event/filter.rb', line 118

def collection_objects
  @collection_objects
end

#collector_id ⇒ Array

DONE: singularize and handle array or single

Returns:

  • (Array) 


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# File 'lib/queries/collecting_event/filter.rb', line 103

def collector_id
  @collector_id
end

#collector_id_or ⇒ Boolean

Parameters:

  • collector_id_or (String) —

    ‘false`, nil - treat the ids in collector_id as “or” ’true’ - treat the ids in collector_id as “and” (only CollectingEvent with all and only all of collector_id will match)

Returns:

  • (Boolean) 


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# File 'lib/queries/collecting_event/filter.rb', line 109

def collector_id_or
  @collector_id_or
end

#collectors ⇒ Boolean?

Returns true - A collector role exists false - A collector role exists nil - not applied.

Returns:

  • (Boolean, nil) —

    true - A collector role exists false - A collector role exists nil - not applied



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# File 'lib/queries/collecting_event/filter.rb', line 74

def collectors
  @collectors
end

#geo_json ⇒ Hash?

Returns in geo_json format (no Feature …) ?!.

Returns:

  • (Hash, nil) —

    in geo_json format (no Feature …) ?!



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# File 'lib/queries/collecting_event/filter.rb', line 95

def geo_json
  @geo_json
end

#geographic_area ⇒ True, ...

Returns true - has geographic_area present false - without geographic_area nil - not applied.

Returns:

  • (True, False, nil) —

    true - has geographic_area present false - without geographic_area nil - not applied



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# File 'lib/queries/collecting_event/filter.rb', line 135

def geographic_area
  @geographic_area
end

#geographic_area_id ⇒ Object

See /lib/queries/otu/filter.rb



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# File 'lib/queries/collecting_event/filter.rb', line 138

def geographic_area_id
  @geographic_area_id
end

#geographic_area_mode ⇒ Object

Returns the value of attribute geographic_area_mode.



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# File 'lib/queries/collecting_event/filter.rb', line 139

def geographic_area_mode
  @geographic_area_mode
end

#georeferences ⇒ True, ...

Returns true - georeferences false - not georeferenced nil - not applied.

Returns:

  • (True, False, nil) —

    true - georeferences false - not georeferenced nil - not applied



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# File 'lib/queries/collecting_event/filter.rb', line 129

def georeferences
  @georeferences
end

#in_labels ⇒ Object

Wildcard wrapped matching any label



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# File 'lib/queries/collecting_event/filter.rb', line 81

def in_labels
  @in_labels
end

#md5_verbatim_label ⇒ Object

If true then in_labels checks only the MD5



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# File 'lib/queries/collecting_event/filter.rb', line 84

def md5_verbatim_label
  @md5_verbatim_label
end

#otu_id ⇒ Array

DONE: singularize and handle array or single

Returns:

  • (Array) 


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# File 'lib/queries/collecting_event/filter.rb', line 99

def otu_id
  @otu_id
end

#radius ⇒ Object

Integer in Meters

!! defaults to 100m



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# File 'lib/queries/collecting_event/filter.rb', line 91

def radius
  @radius
end

#use_max ⇒ String?

Returns the maximum number of CollectionObjects linked to CollectingEvent.

Returns:

  • (String, nil) —

    the maximum number of CollectionObjects linked to CollectingEvent



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# File 'lib/queries/collecting_event/filter.rb', line 143

def use_max
  @use_max
end

#use_min ⇒ String?

Returns the minimum number of CollectionObjects linked to CollectingEvent.

Returns:

  • (String, nil) —

    the minimum number of CollectionObjects linked to CollectingEvent



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# File 'lib/queries/collecting_event/filter.rb', line 147

def use_min
  @use_min
end

#wkt ⇒ Object

A spatial representation in well known text



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# File 'lib/queries/collecting_event/filter.rb', line 87

def wkt
  @wkt
end

Class Method Details

.base_params ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 64

def self.base_params
  a = BASE_PARAMS.dup
  b = a.pop.keys
  (a + b).uniq
end

Instance Method Details

#and_clauses ⇒ Array

Returns:

  • (Array) 


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# File 'lib/queries/collecting_event/filter.rb', line 416

def and_clauses
  [
    between_date_range_facet,
    any_label_facet,
    collecting_event_id_facet,
    verbatim_label_md5_facet,
  ]
end

#any_label_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 334

def any_label_facet
  return nil if in_labels.blank?
  t = "%#{in_labels}%"
  table[:verbatim_label].matches(t).or(table[:print_label].matches(t)).or(table[:document_label].matches(t))
end

#biological_association_query_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 371

def biological_association_query_facet
  return nil if biological_association_query.nil?
  s = 'WITH query_ba_ces AS (' + biological_association_query.all.to_sql + ') ' +
    ::CollectingEvent.joins(:collection_objects)
    .joins("LEFT JOIN query_ba_ces as query_ba_ces1 on collection_objects.id = query_ba_ces1.biological_association_subject_id AND query_ba_ces1.biological_association_subject_type = 'CollectionObject'")
    .joins("LEFT JOIN query_ba_ces as query_ba_ces2 on collection_objects.id = query_ba_ces2.biological_association_object_id AND query_ba_ces2.biological_association_object_type = 'CollectionObject'")
    .where('(query_ba_ces1.id) IS NOT NULL OR (query_ba_ces2.id IS NOT NULL)')
    .to_sql

  ::CollectingEvent.from('(' + s + ') as collecting_events').distinct
end

#collecting_event_id_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 347

def collecting_event_id_facet
  return nil if collecting_event_id.empty?
  table[:id].in(collecting_event_id)
end

#collection_object_query_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 393

def collection_object_query_facet
  return nil if collection_object_query.nil?
  s = 'WITH query_co_ce AS (' + collection_object_query.all.to_sql + ') ' +
    ::CollectingEvent
    .joins(:collection_objects)
    .joins('JOIN query_co_ce as query_co_ce1 on collection_objects.id = query_co_ce1.id')
    .to_sql

  ::CollectingEvent.from('(' + s + ') as collecting_events').distinct
end

#collection_objects_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



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# File 'lib/queries/collecting_event/filter.rb', line 261

def collection_objects_facet
  return nil if collection_objects.nil?
  subquery = ::CollectionObject.where(::CollectionObject.arel_table[:collecting_event_id].eq(::CollectingEvent.arel_table[:id])).arel.exists
  ::CollectingEvent.where(collection_objects ? subquery : subquery.not)
end

#collector_id_facet ⇒ Object

TODO: dry with Source, TaxonName, etc.



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# File 'lib/queries/collecting_event/filter.rb', line 268

def collector_id_facet
  return nil if collector_id.empty?
  o = table
  r = ::Role.arel_table

  a = o.alias('a_')
  b = o.project(a[Arel.star]).from(a)

  c = r.alias('r1')

  b = b.join(c, Arel::Nodes::OuterJoin)
    .on(
      a[:id].eq(c[:role_object_id])
    .and(c[:role_object_type].eq('CollectingEvent'))
    .and(c[:type].eq('Collector'))
    )

  e = c[:id].not_eq(nil)
  f = c[:person_id].in(collector_id)

  b = b.where(e.and(f))
  b = b.group(a['id'])
  b = b.having(a['id'].count.eq(collector_id.length)) unless collector_id_or
  b = b.as('col_z_')

  ::CollectingEvent.joins(Arel::Nodes::InnerJoin.new(b, Arel::Nodes::On.new(b['id'].eq(o['id']))))
end

#collectors_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 362

def collectors_facet
  return nil if collectors.nil?
  if collectors
    ::CollectingEvent.joins(:collectors)
  else
    ::CollectingEvent.where.missing(:collectors)
  end
end

#from_wkt(wkt_shape) ⇒ Object

TODO: check, this should be simplifiable.



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# File 'lib/queries/collecting_event/filter.rb', line 302

def from_wkt(wkt_shape)
  a = RGeo::WKRep::WKTParser.new(Gis::FACTORY, support_wkt12: true)
  b = a.parse(wkt_shape)
  spatial_query(b.geometry_type.to_s, wkt_shape)
end

#geo_json_facet ⇒ Object

Shape is a Hash in GeoJSON format



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# File 'lib/queries/collecting_event/filter.rb', line 309

def geo_json_facet
  return nil if geo_json.nil?
  if a = RGeo::GeoJSON.decode(geo_json)
    return spatial_query(a.geometry_type.to_s, a.to_s)
  else
    return nil
  end
end

#geographic_area_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 216

def geographic_area_facet
  return nil if geographic_area.nil?
  if geographic_area
    ::CollectingEvent.where.not(geographic_area_id: nil).distinct
  else
    ::CollectingEvent.where(geographic_area_id: nil).distinct
  end
end

#geographic_area_id_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 225

def geographic_area_id_facet
  return nil if geographic_area_id.empty?

  a = nil

  case geographic_area_mode
  when nil, true # exact and spatial start the same
    a = ::GeographicArea.where(id: geographic_area_id)
  when false # descendants
    a = ::GeographicArea.descendants_of_any(geographic_area_id)
  end

  b = nil
  case geographic_area_mode
  when nil, false # exact, descendants
    return ::CollectingEvent.where(geographic_area: a)
  when true # spatial
    i = ::GeographicItem.joins(:geographic_areas).where(geographic_areas: a) # .unscope
    wkt_shape = ::GeographicItem.st_union(i).to_a.first['collection'].to_s
    return from_wkt(wkt_shape)
  end
end

#georeferences_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 248

def georeferences_facet
  return nil if georeferences.nil?

  if georeferences
    ::CollectingEvent.joins(:georeferences).distinct
  else
    ::CollectingEvent.left_outer_joins(:georeferences)
      .where(georeferences: {id: nil})
      .distinct
  end
end

#matching_collection_object_id ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 357

def matching_collection_object_id
  return nil if collection_object_id.empty?
  ::CollectingEvent.joins(:collection_objects).where(collection_objects: {id: collection_object_id}).distinct
end

#merge_clauses ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 425

def merge_clauses
  [
    biological_association_query_facet,
    collection_object_query_facet,
    otu_query_facet,
    taxon_name_query_facet,

    collectors_facet,
    collection_objects_facet,
    collector_id_facet,
    geo_json_facet,
    geographic_area_facet,
    geographic_area_id_facet,
    georeferences_facet,
    matching_collection_object_id,
    otu_id_facet,
    use_facet,
    wkt_facet,
  ]
end

#otu_id_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 352

def otu_id_facet
  return nil if otu_id.empty?
  ::CollectingEvent.joins(:otus).where(otus: {id: otu_id}).distinct
end

#otu_query_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 383

def otu_query_facet
  return nil if otu_query.nil?
  s = 'WITH query_otu_ces AS (' + otu_query.all.to_sql + ') ' +
    ::CollectingEvent.joins(:otus)
    .joins('JOIN query_otu_ces as query_otu_ces1 on query_otu_ces1.id = otus.id')
    .to_sql

  ::CollectingEvent.from('(' + s + ') as collecting_events').distinct
end

#spatial_query(geometry_type, wkt) ⇒ Object

TODO: Spatial concern?



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# File 'lib/queries/collecting_event/filter.rb', line 319

def spatial_query(geometry_type, wkt)
  case geometry_type
  when 'Point'
    ::CollectingEvent
      .joins(:geographic_items)
      .where(::GeographicItem.within_radius_of_wkt_sql(wkt, radius ))
  when 'Polygon', 'MultiPolygon'
    ::CollectingEvent
      .joins(:geographic_items)
      .where(::GeographicItem.contained_by_wkt_sql(wkt))
  else
    nil
  end
end

#taxon_name_query_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 404

def taxon_name_query_facet
  return nil if taxon_name_query.nil?
  s = 'WITH query_tn_ce AS (' + taxon_name_query.all.to_sql + ') ' +
    ::CollectingEvent
    .joins(collection_objects: [:otus])
    .joins('JOIN query_tn_ce as query_tn_ce1 on otus.taxon_name_id = query_tn_ce1.id')
    .to_sql

  ::CollectingEvent.from('(' + s + ') as collecting_events').distinct
end

#use_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 201

def use_facet
  return nil if (use_min.blank? && use_max.blank?)
  min_max = [use_min&.to_i, use_max&.to_i ].compact

  q = ::CollectingEvent.joins(:collection_objects)
    .select('collecting_events.*, COUNT(collection_objects.collecting_event_id)')
    .group('collecting_events.id')
    .having("COUNT(collecting_event_id) >= #{min_max[0]}")

  # Untested
  q = q.having("COUNT(collecting_event_id) <= #{min_max[1]}") if min_max[1]

  ::CollectingEvent.from('(' + q.to_sql + ') as collecting_events').distinct
end

#verbatim_label_md5_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 340

def verbatim_label_md5_facet
  return nil unless md5_verbatim_label && in_labels.present?
  md5 = ::Utilities::Strings.generate_md5(in_labels)

  table[:md5_of_verbatim_label].eq(md5)
end

#wkt_facet ⇒ Object 



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# File 'lib/queries/collecting_event/filter.rb', line 296

def wkt_facet
  return nil if wkt.blank?
  from_wkt(wkt)
end