PubliSci
Full description goes here
Note: this software is under active development!
Installation
gem install publisci
Usage
require 'publisci'
include PubliSci::DSL
# Specify input data
data do
# use local or remote paths
source 'https://github.com/wstrinz/publisci/raw/master/spec/csv/bacon.csv'
# specify datacube properties
dimension 'producer', 'pricerange'
measure 'chunkiness'
# set parser specific options
option 'label_column', 'producer'
end
# Describe dataset
do
dataset 'bacon'
title 'Bacon dataset'
creator 'Will Strinz'
description 'some data about bacon'
date '1-10-2010'
end
# Send output to an RDF::Repository
# can also use 'generate_n3' to output a turtle string
repo = to_repository
# run SPARQL queries on the dataset
PubliSci::QueryHelper.execute('select * where {?s ?p ?o} limit 5', repo)
# export in other formats
PubliSci::Writers::ARFF.new.from_store(repo)
The API doc is online. For more code examples see the test files in the source tree.
Project home page
Information on the source tree, documentation, examples, issues and how to contribute, see
http://github.com/wstrinz/publisci
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
Cite
If you use this software, please cite
and one of
- BioRuby: bioinformatics software for the Ruby programming language
- Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Biogems.info
This Biogem is published at (http://biogems.info/index.html#publisci)
Copyright
Copyright (c) 2013 wstrinz. See LICENSE.txt for further details.