Top Level Namespace

Includes:
LibXML, Rake::DSL

Defined Under Namespace

Modules: ProteinToGenomeMapper Classes: CommandRunner, Constants, ConvertUtil, Decoymaker, FastaDB, FastaDatabase, GFFDB, GalaxyStager, GalaxyUtil, ManageDBTool, MascotUtil, MzMLParser, OMSSAUtil, OpenMSDefaults, PepXML, Peptide, PeptideNotInProteinError, PlasmoDB, ProphetTool, ProtXMLToGFFTool, Protein, Randomize, SearchTool, SetupTool, String, SwissprotDatabase, TandemSearchTool, Tool, UniprotMapper

Instance Method Summary collapse

Instance Method Details

#rubygemsObject

We start the columns off with the header name newColumns=Name”],'cd'=>[“CD Antigen Name”],'altnames'=>[“Alternate Names”],

'accessions' =>["Swissprot Accessions"],
'location' => ["Subcellular Location"],
'function' => ["Known Function"],
'ipi' => ["IPI"],
'intact' => ["Interactions"],
'pride' => ['Pride'],
'ensembl'=> ['Ensembl'],
'refsMASS SPEC'=>["MS Refs"], 
'refsGLYCOSYLATION'=>["Glyco Refs"], 
'refsNUCLEOTIDE SEQUENCE'=>["Nucleotide Refs"], 
'refsX-RAY CRYSTALLOGRAPHY'=>["Crystallography Refs"],
'refs3D-STRUCTURE MODELLING'=>["3D-Modelling Refs"],
'refsPROTEIN SEQUENCE'=>["Protein sequence Refs"],
'glycosites'=>["Glycosylation Sites"]


24
# File 'lib/protk/bio_sptr_extensions.rb', line 24

require 'rubygems'