Top Level Namespace

Defined Under Namespace

Modules: OpenTox, Spork Classes: Array, Exception, OTLogger, OwlNamespace, String

PACKAGE_DIR =

package_dir

OT_LOGO =

File.join(CONFIG[:services]["opentox-validation"],"resources/ot-logo.png")

R = R integration workaround to initialize R non-interactively (former rinruby versions did this by default) avoids compiling R with X

nil

TMP_DIR =

File.join(basedir, "tmp")

LOG_DIR =

File.join(basedir, "log")

CONFIG =

YAML.load_file(config_file)

LOGGER = LOGGER = OTLogger.new(logfile,‘daily’) # daily rotation

OTLogger.new(logfile)

TRUE_REGEXP = Regular expressions for parsing classification data

/^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i

FALSE_REGEXP =

/^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i

DEFAULT_TASK_MAX_DURATION = Task durations

AA_SERVER =

CONFIG[:authorization] ? (CONFIG[:authorization][:server] ? CONFIG[:authorization][:server] : nil) : nil

ONTOLOGY_SERVER =

CONFIG[:services]["opentox-ontology"] ? CONFIG[:services]["opentox-ontology"] : "http://apps.ideaconsult.net:8080/ontology"

RDF =

OwlNamespace.new 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'

OWL =

OwlNamespace.new 'http://www.w3.org/2002/07/owl#'

DC =

OwlNamespace.new 'http://purl.org/dc/elements/1.1/'

OT =

OwlNamespace.new 'http://www.opentox.org/api/1.1#'

OTA =

OwlNamespace.new 'http://www.opentox.org/algorithmTypes.owl#'

XSD =

OwlNamespace.new 'http://www.w3.org/2001/XMLSchema#'

@@cactus_uri =

"http://cactus.nci.nih.gov/chemical/structure/"

@@ambit_uri =

"http://ambit.uni-plovdiv.bg:8080/ambit2/depict/cdk?search="