Method: Bio::Shell::Setup#initialize

Defined in:
lib/bio/shell/setup.rb

#initialize ⇒ Setup 



15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
 
# File 'lib/bio/shell/setup.rb', line 15

def initialize
  check_ruby_version

  # command line options
  getoptlong

  # setup working directory
  savedir = setup_savedir

  # load configuration and plugins
  Bio::Shell.configure(savedir)

  # set default to irb mode
  Bio::Shell.cache[:mode] = @mode || :irb

  case Bio::Shell.cache[:mode]
  when :web
    # setup rails server
    Bio::Shell::Web.new
  when :irb
    # setup irb server
    Bio::Shell::Irb.new
  when :script
    # run bioruby shell script
    Bio::Shell::Script.new(@script)
  end
end