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mspire
(0.7.6)
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Documentation for mspire (0.7.6)
Alphabetic Index
File Listing
README
Namespace Listing A-Z
Top Level Namespace
A
AA
(Mspire::Mass)
AA
(Mspire::Isotope)
Activation
(Mspire::Mzml)
AminoacidModification
(Mspire::Ident::Pepxml)
Array
B
Bin
(Mspire)
C
CV
(Mspire)
CV
CV
(Mspire::Mzml)
Centroid
(Mspire::Spectrum)
Centroidish
(Mspire::Spectrum)
Chromatogram
(Mspire::Mzml)
ChromatogramList
(Mspire::Mzml)
Component
(Mspire::Mzml)
Contact
(Mspire::Mzml)
D
DataArray
(Mspire::Mzml)
DataArrayContainerLike
(Mspire::Mzml)
DataProcessing
(Mspire::Mzml)
Db
(Mspire::Ident::Peptide)
Decoy
(Mspire::ErrorRate)
Default
(Mspire::Mzml)
Digester
(Mspire)
Distribution
(Mspire::Isotope)
E
EnzymaticSearchConstraint
(Mspire::Ident::Pepxml)
ErrorRate
(Mspire)
F
Fasta
(Mspire)
FastaFormat
(Bio)
FileContent
(Mspire::Mzml)
FileDescription
(Mspire::Mzml)
FlatFile
(Bio)
I
IO
(Mspire::Ident::Peptide::Db)
IO
Ident
(Mspire)
Index
(Mspire::Mzml)
IndexList
(Mspire::Mzml)
InstrumentConfiguration
(Mspire::Mzml)
IsolationWindow
(Mspire::Mzml)
Isotope
(Mspire)
L
List
(Mspire::Mzml)
M
Mascot
(Mspire)
Mass
(Mspire)
Merge
MolecularFormula
(Mspire)
MsmsPipelineAnalysis
(Mspire::Ident::Pepxml)
MsmsRunSummary
(Mspire::Ident::Pepxml)
Mspire
Mzml
(Mspire)
N
Numeric
O
OBO
(Mspire)
Obo
Ontology
(Obo)
P
Param
(Mspire::CV)
Param
(CV)
Paramable
(Mspire::CV)
Parameters
(Mspire::Ident::Pepxml)
Parser
(Mspire::Mzml)
Peak
(Mspire)
Peptide
(Mspire::Ident)
PeptideHit
(Mspire::Ident)
PeptideHitLike
(Mspire::Ident)
Pepxml
(Mspire::Ident)
Plms1
(Mspire)
Point
(Mspire::Peak)
Precursor
(Mspire::Mzml)
ProcessingMethod
(Mspire::Mzml)
Product
(Mspire::Mzml)
Protein
(Mspire::Ident)
ProteinGroup
(Mspire::Ident)
ProteinGroupComparison
(Mspire::Quant)
ProteinLike
(Mspire::Ident)
Q
Qspec
(Mspire::Quant)
Qspec
(Mspire::Quant::ProteinGroupComparison)
Quant
(Mspire)
Qvalue
(Mspire::Ident::PeptideHit)
Qvalue
(Mspire::ErrorRate)
R
ReferenceableParamGroup
(Mspire::Mzml)
ReferenceableParamGroupRef
(CV)
Results
(Mspire::Quant::Qspec)
Run
(Mspire::Mzml)
S
Sample
(Mspire::Mzml)
SampleEnzyme
(Mspire::Ident::Pepxml)
Scan
(Mspire::Mzml)
ScanList
(Mspire::Mzml)
ScanNumbersNotFound
(Mspire::Mzml)
ScanNumbersNotUnique
(Mspire::Mzml)
ScanSettings
(Mspire::Mzml)
ScanWindow
(Mspire::Mzml)
Search
(Mspire::Ident)
SearchDatabase
(Mspire::Ident::Pepxml)
SearchGroup
(Mspire::Ident)
SearchHit
(Mspire::Ident::Pepxml)
SearchLike
(Mspire::Ident)
SearchResult
(Mspire::Ident::Pepxml)
SearchSummary
(Mspire::Ident::Pepxml)
SelectedIon
(Mspire::Mzml)
Simple
(Mspire::Ident::Pepxml::SearchHit)
Software
(Mspire::Mzml)
SourceFile
(Mspire::Mzml)
Spectrum
(Mspire::Mzml)
Spectrum
(Mspire)
SpectrumLike
(Mspire)
SpectrumList
(Mspire::Mzml)
SpectrumQuery
(Mspire::Ident::Pepxml)
T
TerminalModification
(Mspire::Ident::Pepxml)
U
Updater
(Mspire::Isotope)
UserParam
(Mspire)