Module: Mspire

Defined in:

lib/mspire/isotope.rb,
lib/mspire.rb,
lib/mspire/bin.rb,
lib/mspire/obo.rb,
lib/mspire/mass.rb,
lib/mspire/mass.rb,
lib/mspire/mzml.rb,
lib/mspire/peak.rb,
lib/mspire/ident.rb,
lib/mspire/plms1.rb,
lib/mspire/cv/obo.rb,
lib/mspire/mascot.rb,
lib/mspire/isotope.rb,
lib/mspire/mass/aa.rb,
lib/mspire/mzml/cv.rb,
lib/mspire/version.rb,
lib/mspire/cv/param.rb,
lib/mspire/digester.rb,
lib/mspire/mass/all.rb,
lib/mspire/mzml/run.rb,
lib/mspire/peaklist.rb,
lib/mspire/spectrum.rb,
lib/mspire/mass/util.rb,
lib/mspire/mzml/list.rb,
lib/mspire/mzml/scan.rb,
lib/mspire/paramable.rb,
lib/mspire/isotope/aa.rb,
lib/mspire/mzml/index.rb,
lib/mspire/mzml/plms1.rb,
lib/mspire/user_param.rb,
lib/mspire/commandline.rb,
lib/mspire/mass/common.rb,
lib/mspire/mzml/parser.rb,
lib/mspire/mzml/reader.rb,
lib/mspire/mzml/reader.rb,
lib/mspire/mzml/sample.rb,
lib/mspire/quant/qspec.rb,
lib/mspire/tagged_peak.rb,
lib/mspire/cv/paramable.rb,
lib/mspire/ident/pepxml.rb,
lib/mspire/ident/search.rb,
lib/mspire/imzml/writer.rb,
lib/mspire/mass/element.rb,
lib/mspire/mzml/contact.rb,
lib/mspire/mzml/product.rb,
lib/mspire/ident/peptide.rb,
lib/mspire/ident/protein.rb,
lib/mspire/isotope/neese.rb,
lib/mspire/mzml/io_index.rb,
lib/mspire/mzml/software.rb,
lib/mspire/mzml/spectrum.rb,
lib/mspire/quant/cmdline.rb,
lib/mspire/spectrum_like.rb,
lib/mspire/mass/subatomic.rb,
lib/mspire/mzml/component.rb,
lib/mspire/mzml/precursor.rb,
lib/mspire/mzml/scan_list.rb,
lib/mspire/mzml/activation.rb,
lib/mspire/mzml/data_array.rb,
lib/mspire/mzml/index_list.rb,
lib/mspire/error_rate/decoy.rb,
lib/mspire/ident/peptide/db.rb,
lib/mspire/mzml/scan_window.rb,
lib/mspire/mzml/source_file.rb,
lib/mspire/error_rate/qvalue.rb,
lib/mspire/ident/peptide_hit.rb,
lib/mspire/molecular_formula.rb,
lib/mspire/mzid/modification.rb,
lib/mspire/mzml/chromatogram.rb,
lib/mspire/mzml/file_content.rb,
lib/mspire/mzml/selected_ion.rb,
lib/mspire/spectrum/centroid.rb,
lib/mspire/mzml/scan_settings.rb,
lib/mspire/mzml/spectrum_list.rb,
lib/mspire/ident/protein_group.rb,
lib/mspire/isotope/distribution.rb,
lib/mspire/isotope/distribution.rb,
lib/mspire/mzml/data_processing.rb,
lib/mspire/mzml/file_description.rb,
lib/mspire/mzml/isolation_window.rb,
lib/mspire/quant/spectral_counts.rb,
lib/mspire/mzml/chromatogram_list.rb,
lib/mspire/mzml/io_indexable_list.rb,
lib/mspire/mzml/processing_method.rb,
lib/mspire/ident/pepxml/parameters.rb,
lib/mspire/ident/pepxml/search_hit.rb,
lib/mspire/ident/peptide_hit/qvalue.rb,
lib/mspire/imzml/writer/commandline.rb,
lib/mspire/mzid/search_modification.rb,
lib/mspire/ident/pepxml/modifications.rb,
lib/mspire/ident/pepxml/sample_enzyme.rb,
lib/mspire/ident/pepxml/search_result.rb,
lib/mspire/ident/pepxml/search_summary.rb,
lib/mspire/ident/pepxml/spectrum_query.rb,
lib/mspire/ident/pepxml/search_database.rb,
lib/mspire/ident/pepxml/msms_run_summary.rb,
lib/mspire/mzml/instrument_configuration.rb,
lib/mspire/mzml/data_array_container_like.rb,
lib/mspire/mzml/referenceable_param_group.rb,
lib/mspire/quant/protein_group_comparison.rb,
lib/mspire/ident/pepxml/msms_pipeline_analysis.rb,
lib/mspire/quant/qspec/protein_group_comparison.rb,
lib/mspire/ident/pepxml/search_hit/modification_info.rb,
lib/mspire/fasta.rb

Overview

require ‘set’ require ‘mspire/ident/protein_group’

Defined Under Namespace

Modules: CV, Commandline, ErrorRate, Fasta, Ident, Identml, Imzml, Mascot, Mass, Mzid, Paramable, Quant, SpectrumLike Classes: Bin, Digester, Isotope, MolecularFormula, Mzml, OBO, Peak, Peaklist, Plms1, Spectrum, TaggedPeak, UserParam

Constant Summary

CITE =

"Prince JT, Marcotte EM. mspire: mass spectrometry proteomics in Ruby. Bioinformatics. 2008. 24(23):2796-7."

VERSION =

"0.10.7"