Class: Moab::StorageObjectVersion

Inherits:
Object
  • Object
show all
Defined in:
lib/moab/storage_object_version.rb

Overview

Note:

Copyright © 2012 by The Board of Trustees of the Leland Stanford Junior University. All rights reserved. See LICENSE for details.

A class to represent a version subdirectory within an object’s home directory in preservation storage

Data Model

  • StorageRepository = represents a digital object repository storage node

    • StorageServices = supports application layer access to the repository’s objects, data, and metadata

    • StorageObject = represents a digital object’s repository storage location and ingest/dissemination methods

      • StorageObjectVersion [1..*] = represents a version subdirectory within an object’s home directory

        • Bagger [1] = utility for creating bagit packages for ingest or dissemination

Instance Attribute Summary collapse

Instance Method Summary collapse

Constructor Details

#initialize(storage_object, version_id) ⇒ StorageObjectVersion

Returns a new instance of StorageObjectVersion.

Parameters:

  • storage_object (StorageObject) —

    The object representing the digital object’s storage location

  • version_id (Integer, String) —

    The ordinal version number or a string like ‘v0003’



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# File 'lib/moab/storage_object_version.rb', line 30

def initialize(storage_object, version_id)
  if version_id.is_a?(Integer)
    @version_id = version_id
  elsif version_id.is_a?(String) && version_id =~ /^v(\d+)$/
    @version_id = version_id.sub(/^v/, '').to_i
  else
    raise "version_id (#{version_id}) is not in a recognized format"
  end
  @version_name = StorageObject.version_dirname(@version_id)
  @version_pathname = storage_object.object_pathname.join(@version_name)
  @storage_object = storage_object
  @inventory_cache = {}
end

Instance Attribute Details

#inventory_cache ⇒ Hash<FileInventory>

Returns Cached copies of versionInventory, versionAdditions, or manifestInventory.

Returns:

  • (Hash<FileInventory>) —

    Cached copies of versionInventory, versionAdditions, or manifestInventory



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# File 'lib/moab/storage_object_version.rb', line 26

def inventory_cache
  @inventory_cache
end

#storage_object ⇒ Pathname

Returns The location of the object’s home directory.

Returns:

  • (Pathname) —

    The location of the object’s home directory



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# File 'lib/moab/storage_object_version.rb', line 23

def storage_object
  @storage_object
end

#version_id ⇒ Integer

Returns The ordinal version number.

Returns:

  • (Integer) —

    The ordinal version number



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# File 'lib/moab/storage_object_version.rb', line 14

def version_id
  @version_id
end

#version_name ⇒ String

Returns The “v0001” directory name derived from the version id.

Returns:

  • (String) —

    The “v0001” directory name derived from the version id



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# File 'lib/moab/storage_object_version.rb', line 17

def version_name
  @version_name
end

#version_pathname ⇒ Pathname

Returns The location of the version inside the home directory.

Returns:

  • (Pathname) —

    The location of the version inside the home directory



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# File 'lib/moab/storage_object_version.rb', line 20

def version_pathname
  @version_pathname
end

Instance Method Details

#composite_key ⇒ String

Returns The unique identifier concatenating digital object id with version id.

Returns:

  • (String) —

    The unique identifier concatenating digital object id with version id



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# File 'lib/moab/storage_object_version.rb', line 45

def composite_key
  @storage_object.digital_object_id + '-' + StorageObject.version_dirname(@version_id)
end

#deactivate(timestamp) ⇒ null

Returns Deactivate this object version by moving it to another directory. (Used by restore operation).

Parameters:

  • timestamp (Time) —

    The time at which the deactivation was initiated. Used to name the inactive directory

Returns:

  • (null) —

    Deactivate this object version by moving it to another directory. (Used by restore operation)



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# File 'lib/moab/storage_object_version.rb', line 322

def deactivate(timestamp)
  return unless @version_pathname.exist?
  timestamp_pathname = @version_pathname.parent.join(timestamp.utc.iso8601.gsub(/[-:]/, ''))
  timestamp_pathname.mkpath
  demote_pathame = timestamp_pathname.join(@version_pathname.basename)
  @version_pathname.rename(demote_pathame)
end

#exist? ⇒ Boolean

Returns true if the object version directory exists.

Returns:

  • (Boolean) —

    true if the object version directory exists



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# File 'lib/moab/storage_object_version.rb', line 50

def exist?
  @version_pathname.exist?
end

#file_category_pathname(file_category) ⇒ Pathname

Returns Pathname object containing this version’s storage home for the specified file category.

Parameters:

  • file_category (String) —

    The category of file (‘content’, ‘metadata’, or ‘s’)

Returns:

  • (Pathname) —

    Pathname object containing this version’s storage home for the specified file category



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# File 'lib/moab/storage_object_version.rb', line 97

def file_category_pathname(file_category)
  if file_category =~ /manifest/
    @version_pathname.join('manifests')
  else
    @version_pathname.join('data', file_category)
  end
end

#file_inventory(type) ⇒ FileInventory

Returns The file inventory of the specified type for this version.

Parameters:

  • type (String) —

    The type of inventory to return (version|additions|manifests)

Returns:

  • (FileInventory) —

    The file inventory of the specified type for this version

See Also:



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# File 'lib/moab/storage_object_version.rb', line 109

def file_inventory(type)
  if version_id > 0
    return @inventory_cache[type] if @inventory_cache.key?(type)
    @inventory_cache[type] = FileInventory.read_xml_file(@version_pathname.join('manifests'), type)
  else
    groups = %w[content metadata].collect { |id| FileGroup.new(:group_id => id) }
    FileInventory.new(
      :type => 'version',
      :digital_object_id => @storage_object.digital_object_id,
      :version_id => @version_id,
      :groups => groups
    )
  end
end

#file_pathname(file_category, file_id) ⇒ Pathname

Returns Pathname object containing this version’s storage path for the specified file.

Parameters:

  • file_category (String) —

    The category of file (‘content’, ‘metadata’, or ‘s’)

  • file_id (String) —

    The name of the file (path relative to base directory)

Returns:

  • (Pathname) —

    Pathname object containing this version’s storage path for the specified file



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# File 'lib/moab/storage_object_version.rb', line 91

def file_pathname(file_category, file_id)
  file_category_pathname(file_category).join(file_id)
end

#find_filepath(file_category, file_id) ⇒ Pathname

Returns Pathname object containing the full path for the specified file.

Parameters:

  • file_category (String) —

    The category of file (‘content’, ‘metadata’, or ‘manifest’)

  • file_id (String) —

    The name of the file (path relative to base directory)

Returns:

  • (Pathname) —

    Pathname object containing the full path for the specified file



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# File 'lib/moab/storage_object_version.rb', line 68

def find_filepath(file_category, file_id)
  this_version_filepath = file_pathname(file_category, file_id)
  return this_version_filepath if this_version_filepath.exist?
  if file_category == 'manifest'
    msg = "manifest file #{file_id} not found for #{@storage_object.digital_object_id} - #{@version_id}"
    raise FileNotFoundException, msg
  end
  file_signature = file_inventory('version').file_signature(file_category, file_id)
  catalog_filepath = signature_catalog.catalog_filepath(file_signature)
  @storage_object.storage_filepath(catalog_filepath)
end

#find_filepath_using_signature(_file_category, file_signature) ⇒ Pathname

Returns Pathname object containing the full path for the specified file.

Parameters:

  • _file_category (unused; kept here for backwards compatibility)
  • file_signature (FileSignature) —

    The signature of the file

Returns:

  • (Pathname) —

    Pathname object containing the full path for the specified file



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# File 'lib/moab/storage_object_version.rb', line 83

def find_filepath_using_signature(_file_category, file_signature)
  catalog_filepath = signature_catalog.catalog_filepath(file_signature)
  @storage_object.storage_filepath(catalog_filepath)
end

#find_signature(file_category, file_id) ⇒ FileSignature

Returns signature of the specified file.

Parameters:

  • file_category (String) —

    The category of file (‘content’, ‘metadata’, or ‘manifest’))

  • file_id (String) —

    The name of the file (path relative to base directory)

Returns:



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# File 'lib/moab/storage_object_version.rb', line 57

def find_signature(file_category, file_id)
  if file_category =~ /manifest/
    file_inventory('manifests').file_signature('manifests', file_id)
  else
    file_inventory('version').file_signature(file_category, file_id)
  end
end

#generate_differences_report(old_inventory, new_inventory) ⇒ void

This method returns an undefined value.

Returns generate a file inventory differences report and save to disk.

Parameters:



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# File 'lib/moab/storage_object_version.rb', line 190

def generate_differences_report(old_inventory, new_inventory)
  differences = FileInventoryDifference.new.compare(old_inventory, new_inventory)
  differences.write_xml_file(@version_pathname.join('manifests'))
end

#generate_manifest_inventory ⇒ void

This method returns an undefined value.

Returns examine the version’s directory and create/serialize a FileInventory containing the manifest files.



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# File 'lib/moab/storage_object_version.rb', line 197

def generate_manifest_inventory
  manifest_inventory = FileInventory.new(
    :type => 'manifests',
    :digital_object_id => @storage_object.digital_object_id,
    :version_id => @version_id
  )
  pathname = @version_pathname.join('manifests')
  manifest_inventory.groups << FileGroup.new(:group_id => 'manifests').group_from_directory(pathname, false)
  manifest_inventory.write_xml_file(pathname)
end

#ingest_bag_data(bag_dir) ⇒ void

This method returns an undefined value.

Returns Create the version subdirectory and move files into it.

Parameters:

  • bag_dir (Pathname, String) —

    The location of the bag to be ingested



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# File 'lib/moab/storage_object_version.rb', line 137

def ingest_bag_data(bag_dir)
  raise "Version already exists: #{@version_pathname}" if @version_pathname.exist?
  @version_pathname.join('manifests').mkpath
  bag_dir = Pathname(bag_dir)
  ingest_dir(bag_dir.join('data'), @version_pathname.join('data'))
  ingest_file(bag_dir.join(FileInventory.xml_filename('version')), @version_pathname.join('manifests'))
  ingest_file(bag_dir.join(FileInventory.xml_filename('additions')), @version_pathname.join('manifests'))
end

#ingest_dir(source_dir, target_dir, use_links = true) ⇒ void

This method returns an undefined value.

Returns recursively link or copy the source directory contents to the target directory.

Parameters:

  • source_dir (Pathname) —

    The source location of the directory whose contents are to be ingested

  • target_dir (Pathname) —

    The target location of the directory into which files are ingested

  • use_links (Boolean) (defaults to: true) —

    If true, use hard links; if false, make copies



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# File 'lib/moab/storage_object_version.rb', line 151

def ingest_dir(source_dir, target_dir, use_links = true)
  raise "cannot copy - target already exists: #{target_dir.expand_path}" if target_dir.exist?
  target_dir.mkpath
  source_dir.children.each do |child|
    if child.directory?
      ingest_dir(child, target_dir.join(child.basename), use_links)
    else
      ingest_file(child, target_dir, use_links)
    end
  end
end

#ingest_file(source_file, target_dir, use_links = true) ⇒ void

This method returns an undefined value.

Returns link or copy the specified file from source location to the version directory.

Parameters:

  • source_file (Pathname) —

    The source location of the file to be ingested

  • target_dir (Pathname) —

    The location of the directory in which to place the file

  • use_links (Boolean) (defaults to: true) —

    If true, use hard links; if false, make copies



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# File 'lib/moab/storage_object_version.rb', line 168

def ingest_file(source_file, target_dir, use_links = true)
  if use_links
    FileUtils.link(source_file.to_s, target_dir.to_s) #, :force => true)
  else
    FileUtils.copy(source_file.to_s, target_dir.to_s)
  end
end

#signature_catalog ⇒ SignatureCatalog

Returns The signature catalog of the digital object as of this version.

Returns:

  • (SignatureCatalog) —

    The signature catalog of the digital object as of this version



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# File 'lib/moab/storage_object_version.rb', line 126

def signature_catalog
  if version_id > 0
    SignatureCatalog.read_xml_file(@version_pathname.join('manifests'))
  else
    SignatureCatalog.new(:digital_object_id => @storage_object.digital_object_id)
  end
end

#update_catalog(signature_catalog, new_inventory) ⇒ void

This method returns an undefined value.

Returns Updates the catalog to include newly added files, then saves it to disk.

Parameters:

See Also:



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# File 'lib/moab/storage_object_version.rb', line 181

def update_catalog(signature_catalog, new_inventory)
  signature_catalog.update(new_inventory, @version_pathname.join('data'))
  signature_catalog.write_xml_file(@version_pathname.join('manifests'))
end

#verify_manifest_inventory ⇒ VerificationResult

Return true if the manifest inventory matches the actual files

Returns:



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# File 'lib/moab/storage_object_version.rb', line 219

def verify_manifest_inventory
  # read/parse manifestInventory.xml
  result = VerificationResult.new("manifest_inventory")
  manifest_inventory = file_inventory('manifests')
  result.subentities << VerificationResult.verify_value('composite_key', composite_key, manifest_inventory.composite_key)
  result.subentities << VerificationResult.verify_truth('manifests_group', !manifest_inventory.group_empty?('manifests'))
  # measure the manifest signatures of the files in the directory (excluding manifestInventory.xml)
  directory_inventory = FileInventory.new.inventory_from_directory(@version_pathname.join('manifests'), 'manifests')
  directory_inventory.digital_object_id = storage_object.digital_object_id
  directory_group = directory_inventory.group('manifests')
  directory_group.remove_file_having_path("manifestInventory.xml")
  # compare the measured signatures against the values in manifestInventory.xml
  diff = FileInventoryDifference.new
  diff.compare(manifest_inventory, directory_inventory)
  compare_result = VerificationResult.new('file_differences')
  compare_result.verified = (diff.difference_count == 0)
  compare_result.details = diff.differences_detail
  result.subentities << compare_result
  result.verified = result.subentities.all?(&:verified)
  result
end

#verify_signature_catalog ⇒ VerificationResult

Returns:



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# File 'lib/moab/storage_object_version.rb', line 242

def verify_signature_catalog
  result = VerificationResult.new("signature_catalog")
  signature_catalog = self.signature_catalog
  result.subentities << VerificationResult.verify_value('signature_key', composite_key, signature_catalog.composite_key)
  found = 0
  missing = []
  object_pathname = storage_object.object_pathname
  signature_catalog.entries.each do |catalog_entry|
    storage_location = object_pathname.join(catalog_entry.storage_path)
    if storage_location.exist?
      found += 1
    else
      missing << storage_location.to_s
    end
  end
  file_result = VerificationResult.new("storage_location")
  file_result.verified = (found == signature_catalog.file_count)
  file_result.details = {
    'expected' => signature_catalog.file_count,
    'found' => found
  }
  file_result.details['missing'] = missing unless missing.empty?
  result.subentities << file_result
  result.verified = result.subentities.all?(&:verified)
  result
end

#verify_version_additions ⇒ Boolean

Returns true if files in data folder match files listed in version addtions inventory

Returns:

  • (Boolean) —

    returns true if files in data folder match files listed in version addtions inventory



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# File 'lib/moab/storage_object_version.rb', line 304

def verify_version_additions
  result = VerificationResult.new("version_additions")
  version_additions = file_inventory('additions')
  result.subentities << VerificationResult.verify_value('composite_key', composite_key, version_additions.composite_key)
  data_directory = @version_pathname.join('data')
  directory_inventory = FileInventory.new(:type => 'directory').inventory_from_directory(data_directory)
  diff = FileInventoryDifference.new
  diff.compare(version_additions, directory_inventory)
  compare_result = VerificationResult.new('file_differences')
  compare_result.verified = (diff.difference_count == 0)
  compare_result.details = diff.differences_detail
  result.subentities << compare_result
  result.verified = result.subentities.all?(&:verified)
  result
end

#verify_version_inventory ⇒ Boolean

Returns true if files & signatures listed in version inventory can all be found.

Returns:

  • (Boolean) —

    true if files & signatures listed in version inventory can all be found



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# File 'lib/moab/storage_object_version.rb', line 270

def verify_version_inventory
  result = VerificationResult.new("version_inventory")
  version_inventory = file_inventory('version')
  result.subentities << VerificationResult.verify_value('inventory_key', composite_key, version_inventory.composite_key)
  signature_catalog = self.signature_catalog
  result.subentities << VerificationResult.verify_value('signature_key', composite_key, signature_catalog.composite_key)
  found = 0
  missing = []
  version_inventory.groups.each do |group|
    group.files.each do |file|
      file.instances.each do |instance|
        relative_path = File.join(group.group_id, instance.path)
        catalog_entry = signature_catalog.signature_hash[file.signature]
        if !catalog_entry.nil?
          found += 1
        else
          missing << relative_path.to_s
        end
      end
    end
  end
  file_result = VerificationResult.new("catalog_entry")
  file_result.verified = (found == version_inventory.file_count)
  file_result.details = {
    'expected' => version_inventory.file_count,
    'found' => found
  }
  file_result.details['missing'] = missing unless missing.empty?
  result.subentities << file_result
  result.verified = result.subentities.all?(&:verified)
  result
end

#verify_version_storage ⇒ VerificationResult

Return result of testing correctness of version manifests

Returns:



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# File 'lib/moab/storage_object_version.rb', line 209

def verify_version_storage
  result = VerificationResult.new(composite_key)
  result.subentities << verify_manifest_inventory
  result.subentities << verify_version_inventory
  result.subentities << verify_version_additions
  result.verified = result.subentities.all?(&:verified)
  result
end