Class: Google::Apis::GenomicsV1::ReadGroupSet

Inherits:
Object
  • Object
show all
Includes:
Core::Hashable, Core::JsonObjectSupport
Defined in:
generated/google/apis/genomics_v1/classes.rb,
generated/google/apis/genomics_v1/representations.rb,
generated/google/apis/genomics_v1/representations.rb

Overview

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way. * A read group set belongs to one dataset. * A read group belongs to one read group set.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Core::JsonObjectSupport

#to_json

Methods included from Core::Hashable

process_value, #to_h

Constructor Details

#initialize(**args) ⇒ ReadGroupSet

Returns a new instance of ReadGroupSet.


1354
1355
1356
# File 'generated/google/apis/genomics_v1/classes.rb', line 1354

def initialize(**args)
   update!(**args)
end

Instance Attribute Details

#dataset_idString

The dataset to which this read group set belongs. Corresponds to the JSON property datasetId

Returns:

  • (String)

1325
1326
1327
# File 'generated/google/apis/genomics_v1/classes.rb', line 1325

def dataset_id
  @dataset_id
end

#filenameString

The filename of the original source file for this read group set, if any. Corresponds to the JSON property filename

Returns:

  • (String)

1341
1342
1343
# File 'generated/google/apis/genomics_v1/classes.rb', line 1341

def filename
  @filename
end

#idString

The server-generated read group set ID, unique for all read group sets. Corresponds to the JSON property id

Returns:

  • (String)

1320
1321
1322
# File 'generated/google/apis/genomics_v1/classes.rb', line 1320

def id
  @id
end

#infoHash<String,Array<Object>>

A map of additional read group set information. Corresponds to the JSON property info

Returns:

  • (Hash<String,Array<Object>>)

1352
1353
1354
# File 'generated/google/apis/genomics_v1/classes.rb', line 1352

def info
  @info
end

#nameString

The read group set name. By default this will be initialized to the sample name of the sequenced data contained in this set. Corresponds to the JSON property name

Returns:

  • (String)

1336
1337
1338
# File 'generated/google/apis/genomics_v1/classes.rb', line 1336

def name
  @name
end

#read_groupsArray<Google::Apis::GenomicsV1::ReadGroup>

The read groups in this set. There are typically 1-10 read groups in a read group set. Corresponds to the JSON property readGroups


1347
1348
1349
# File 'generated/google/apis/genomics_v1/classes.rb', line 1347

def read_groups
  @read_groups
end

#reference_set_idString

The reference set to which the reads in this read group set are aligned. Corresponds to the JSON property referenceSetId

Returns:

  • (String)

1330
1331
1332
# File 'generated/google/apis/genomics_v1/classes.rb', line 1330

def reference_set_id
  @reference_set_id
end

Instance Method Details

#update!(**args) ⇒ Object

Update properties of this object


1359
1360
1361
1362
1363
1364
1365
1366
1367
# File 'generated/google/apis/genomics_v1/classes.rb', line 1359

def update!(**args)
  @id = args[:id] if args.key?(:id)
  @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
  @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
  @name = args[:name] if args.key?(:name)
  @filename = args[:filename] if args.key?(:filename)
  @read_groups = args[:read_groups] if args.key?(:read_groups)
  @info = args[:info] if args.key?(:info)
end