Fishtank

This library uses the phenoscaperb gem to query the Phenoscape API for basic statistics on a taxon, entity, and quality basis. It then renders the results as an SVG visualization.

viz

Basic use

gem install fishtank

require 'fishtank'

fish = 'VTO_0037519'
lizard = 'VTO_9007513' 
pan = 'VTO_0011989'
homininae = 'VTO_0011988'

# Create a new tank
tank = FishTank::Tank.new

# Make some Taxa
t = FishTank::Taxon::Arm.new(taxon_id: homininae)
f = FishTank::Taxon::Fish.new(taxon_id: fish)
v = FishTank::Taxon::Tetrapod.new(taxon_id: lizard)

# Add the Taxa to the tank
tank.add(t)
tank.add(f)
tank.add(v)

# Render the tank
FishTank::Draw.tank(tank: tank, attributes: FishTank::QUALITIES)

Then in the terminal (file is SVG, .html is convenience)

ruby your_file.rb > index.html
open index.html

About, thanks.

Concieved and implemented at the 2017 Phenoscape KB-DataFest. Special thanks to Wasila Dahdul for her help with the taxon models and Scott Chamberlain for phenoscaperb.

License

MIT