Module: Bio::AssemblyGraphAlgorithms

Defined in:

lib/assembly/fluffer.rb,
lib/assembly/all_orfs.rb,
lib/assembly/node_finder.rb,
lib/assembly/graph_explorer.rb,
lib/assembly/bam_probe_read_selector.rb,
lib/assembly/acyclic_connection_finder.rb,
lib/assembly/coverage_based_graph_filter.rb,
lib/assembly/kmer_coverage_based_path_filter.rb,
lib/assembly/velvet_graph_sequence_extractor.rb,
lib/assembly/contig_printer.rb

Defined Under Namespace

Classes: AcyclicConnectionFinder, AllOrfsFinder, BamProbeReadSelector, BubblyAssembler, ConnectivityBasedGraphFilter, ContigPrinter, CoverageBasedGraphFilter, Dijkstra, Fluffer, GraphExplorer, GraphWalkingException, HeightFinder, KmerCoverageBasedPathFilter, LazyGraphWalker, NodeFinder, PairedEndAssembler, SequenceHasher, SingleCoherentPathsBetweenNodesFinder, SingleCoherentWanderer, SingleEndedAssembler, TrailSet