Documentation for ensembl (0.0.9)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

A

ActiveRecord
Allele (Ensembl::Variation)
AlleleCode (Ensembl::Variation)
AltAllele (Ensembl::Core)
AltAlleleAttrib (Ensembl::Core)
AltAlleleGroup (Ensembl::Core)
Analysis (Ensembl::Core)
AnalysisDescription (Ensembl::Core)
Assembly (Ensembl::Core)
AssemblyException (Ensembl::Core)
AssociateStudy (Ensembl::Variation)
AssociatedGroup (Ensembl::Core)
AssociatedXref (Ensembl::Core)
Attrib (Ensembl::Variation)
AttribSet (Ensembl::Variation)
AttribType (Ensembl::Variation)
AttribType (Ensembl::Core)

C

CompressedGenotypeRegion (Ensembl::Variation)
CompressedGenotypeVar (Ensembl::Variation)
Connection (Ensembl::Core)
Connection (Ensembl::Variation)
ConnectionPool (Ensembl)
CoordSystem (Ensembl::Core)
CoordSystem (Ensembl::Variation)
Core (Ensembl)

D

DataFile (Ensembl::Core)
DensityFeature (Ensembl::Core)
DensityType (Ensembl::Core)
DependentXref (Ensembl::Core)
Ditag (Ensembl::Core)
DitagFeature (Ensembl::Core)
Dna (Ensembl::Core)
DnaAlignFeature (Ensembl::Core)

E

Ensembl
Exon (Ensembl::Core)
ExonTranscript (Ensembl::Core)
ExternalDb (Ensembl::Core)
ExternalSynonym (Ensembl::Core)

F

FailedAllele (Ensembl::Variation)
FailedDescription (Ensembl::Variation)
FailedStructuralVariation (Ensembl::Variation)
FailedVariation (Ensembl::Variation)

G

Gene (Ensembl::Core)
GeneArchive (Ensembl::Core)
GeneAttrib (Ensembl::Core)
GenomeStatistics (Ensembl::Core)
Genotype (Ensembl::Helpers)
GenotypeCode (Ensembl::Variation)

H

Helpers (Ensembl)

I

IdentityXref (Ensembl::Core)
Individual (Ensembl::Variation)
IndividualGenotype (Ensembl::Variation)
IndividualGenotypeMultipleBp (Ensembl::Variation)
IndividualPopulation (Ensembl::Variation)
IndividualSynonym (Ensembl::Variation)
IndividualType (Ensembl::Variation)
Interpro (Ensembl::Core)
IntronSupportingEvidence (Ensembl::Core)

K

Karyotype (Ensembl::Core)

L

LikeSearch (ActiveRecord)

M

Map (Ensembl::Core)
MappingSession (Ensembl::Core)
MappingSet (Ensembl::Core)
Marker (Ensembl::Core)
MarkerFeature (Ensembl::Core)
MarkerMapLocation (Ensembl::Core)
MarkerSynonym (Ensembl::Core)
Meta (Ensembl::Variation)
Meta (Ensembl::Core)
MetaCoord (Ensembl::Variation)
MetaCoord (Ensembl::Core)
MiscAttrib (Ensembl::Core)
MiscFeature (Ensembl::Core)
MiscFeatureMiscSet (Ensembl::Core)
MiscSet (Ensembl::Core)
ModelBase (Ensembl::Variation)
ModelBase (Ensembl::Core)
MotifFreatureVariation (Ensembl::Variation)

O

ObjectXref (Ensembl::Core)
OntologyXref (Ensembl::Core)
Operon (Ensembl::Core)
OperonTranscript (Ensembl::Core)

P

PeptideArchive (Ensembl::Core)
Phenotype (Ensembl::Variation)
PhenotypeFeature (Ensembl::Variation)
PhenotypeFeatureAttrib (Ensembl::Variation)
Population (Ensembl::Variation)
PopulationGenotype (Ensembl::Variation)
PopulationStructure (Ensembl::Variation)
PopulationSynonym (Ensembl::Variation)
PredictionExon (Ensembl::Core)
PredictionTranscript (Ensembl::Core)
PrimaryKeyOverrides (Ensembl)
ProteinAlignFeature (Ensembl::Core)
ProteinFeature (Ensembl::Core)
ProteinFunctionPredictions (Ensembl::Variation)
Publication (Ensembl::Variation)

R

RegulatoryFeatureVariation (Ensembl::Variation)
RepeatConsensus (Ensembl::Core)
RepeatFeature (Ensembl::Core)

S

SeqRegion (Ensembl::Core)
SeqRegionAttrib (Ensembl::Core)
SeqRegionMapping (Ensembl::Core)
SeqRegionSynonym (Ensembl::Core)
SimpleFeature (Ensembl::Core)
Source (Ensembl::Variation)
SplicingEvent (Ensembl::Core)
SplicingEventFeature (Ensembl::Core)
SplicingTranscriptPair (Ensembl::Core)
StableIdEvent (Ensembl::Core)
StableIdHistory (Ensembl::Core)
StrainGtypePoly (Ensembl::Variation)
StructuralVariation (Ensembl::Variation)
StructuralVariationAssociation (Ensembl::Variation)
StructuralVariationFeature (Ensembl::Variation)
StructuralVariationSample (Ensembl::Variation)
Study (Ensembl::Variation)
StudyVariation (Ensembl::Variation)
SubmitterHandle (Ensembl::Variation)
SubsnpHandle (Ensembl::Variation)
SubsnpMap (Ensembl::Variation)
SupportingFeature (Ensembl::Core)

T

TableNameOverrides (Ensembl)
TaggedVariationFeature (Ensembl::Variation)
Transcript (Ensembl::Core)
TranscriptAttrib (Ensembl::Core)
TranscriptIntronSupportingEvidence (Ensembl::Core)
TranscriptSupportingFeature (Ensembl::Core)
TranscriptVariation (Ensembl::Variation)
Translation (Ensembl::Core)
TranslationAttrib (Ensembl::Core)
TranslationMd5 (Ensembl::Variation)

U

UnmappedObject (Ensembl::Core)
UnmappedReason (Ensembl::Core)

V

Variation (Ensembl::Variation)
Variation (Ensembl)
VariationCitation (Ensembl::Variation)
VariationFeature (Ensembl::Variation)
VariationGenename (Ensembl::Variation)
VariationHgvs (Ensembl::Variation)
VariationPosition (Ensembl::Helpers)
VariationSet (Ensembl::Variation)
VariationSetStructuralVariation (Ensembl::Variation)
VariationSetStructure (Ensembl::Variation)
VariationSetVariation (Ensembl::Variation)
VariationSynonym (Ensembl::Variation)

X

Xref (Ensembl::Core)