Module: Bioroebe::CodonTablesFrequencies

Defined in:

lib/bioroebe/constants/constants.rb

Overview

Bioroebe::CodonTablesFrequencies

Constant Summary

FILE_HOMO_SAPIENS =

#

Bioroebe::CodonTablesFrequencies::FILE_HOMO_SAPIENS

Note that before the rewrite in September 2019, there was another old constant referring to this entry here, called CODON_TABLE_FOR_HOMO_SAPIENS. That latter constant was removed in 2019, to simplify the code and make it overall more consistent.

#

bl $RUBY_BIOROEBE/codon_tables/frequencies/9606_Homo_sapiens.yml

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"9606_Homo_sapiens.yml"

FILE_E_COLI =

#

FILE_E_COLI

This is for the bacterium E. coli.

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"83333_Escherichia_coli_K12.yml"

FILE_SACCHAROMYCES_CEREVISIAE =

#

FILE_SACCHAROMYCES_CEREVISIAE

This is for the yeast Saccharomyces cerevisiae.

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"4932_Saccharomyces_cerevisiae.yml"

FILE_FELIS_CATUS =

#

FILE_FELIS_CATUS

This is for the domestic cat.

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"9685_Felis_catus.yml"

FILE_ARABIDOPSIS_THALIANA =

#

FILE_ARABIDOPSIS_THALIANA

This is for Arabidopsis thaliana.

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"3702_Arabidopsis_thaliana.yml"

FILE_DROSOPHILA_MELANOGASTER =

#

FILE_DROSOPHILA_MELANOGASTER

This is for the fruit fly.

#

"#{::Bioroebe::DIRECTORY_CODON_TABLES_FREQUENCIES}"\
"7227_Drosophila_melanogaster.yml"