Class: Bioroebe::Quiz::ThreeLetterToAminoacid
Overview
Bioroebe::Quiz::ThreeLetterToAminoacid
Constant Summary
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- NAMESPACE =
inspect
- ONE_LETTER_TO_FULL_NAME =
#
ONE_LETTER_TO_FULL_NAME
#
FILE_AMINO_ACIDS_LONG_NAME_TO_ONE_LETTER
- SLEEP_FOR_THIS_AMOUNT =
#
SLEEP_FOR_THIS_AMOUNT
#
2.2
CommandlineApplication::OLD_VERBOSE_VALUE
ColoursForBase::ARRAY_HTML_COLOURS_IN_USE
Class Method Summary
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-
.[](i = '') ⇒ Object
# === Bioroebe::Quiz::ThreeLetterToAminoacid[] ========================================================================= #.
Instance Method Summary
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#all_aminoacids?, #append_what_into, #at_home?, #be_silent, #be_verbose?, #cat, #ccliner, #change_directory, #cliner, #codon_table_dataset?, #codon_to_aminoacid, #codons_for?, #colourize_this_dna_sequence, #complement, #cp, #disable_warnings, #download_dir?, #editor?, #enable_warnings, #ensure_that_the_base_directories_exist, #esystem, #extract, #is_this_a_start_codon?, #is_this_a_stop_codon?, #leading_five_prime, #load_bioroebe_yaml_file, #log_directory?, #one_letter_to_long_name, #one_to_three, #only_numbers?, #open_in_browser, #opne, #opnn, #pad_with_double_quotes, #pad_with_single_quotes, #partner_nucleotide, #remove_numbers, #remove_trailing_ansii_escape_code, #return_all_possible_start_codons, #return_array_of_one_letter_aminoacids, #return_cheerful_person, #return_chunked_display, #return_ubiquitin_sequence, #set_be_verbose, #start_codon?, #stop_codons?, #strict_filter_away_invalid_aminoacids, #taxonomy_download_directory?, #three_to_one, #to_rna, #trailing_three_prime, #use_opn?, #verbose_truth, #was_or_were, #without_extname, #write_what_into
#commandline_arguments?, #commandline_arguments_that_are_files?, #e, #first?, #first_non_hyphen_argument?, #remove_hyphens_from_the_commandline_arguments, #return_commandline_arguments_as_string, #return_commandline_arguments_that_are_not_files, #return_entries_without_two_leading_hyphens, #select_commandline_arguments, #select_entries_starting_with_two_hyphens, #set_commandline_arguments
#colourize_this_aminoacid_sequence_for_the_commandline, #colourize_this_nucleotide_sequence, #disable_colours, #ecomment, #efancy, #egold, #enable_colours, #eorange, #eparse, #erev, #red, #remove_trailing_escape_part, #return_colour_for_nucleotides, #rev, #sdir, #set_use_colours, #sfancy, #sfile, #simp, #swarn, #use_colours?, #use_colours_within_the_bioroebe_namespace?
Methods inherited from Base
#append_what_into, #can_base_pair?, #convert_global_env, #delete_file, #directory_to_the_codon_tables?, #file_readlines, #infer_the_namespace, #is_on_roebe?, #is_palindrome?, #main_encoding?, #mkdir, #move_file, #mv, #namespace?, #no_file_exists_at, #no_newlines, #project_yaml_directory?, #rds, #register_sigint, #return_pwd, #return_the_first_line_of_this_file, #word_wrap, #write_what_into
Constructor Details
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 44
def initialize(
i = nil,
run_already = true
)
reset
set_input(i)
run if run_already
end
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Class Method Details
.[](i = '') ⇒ Object
#
Bioroebe::Quiz::ThreeLetterToAminoacid[]
#
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 155
def self.[](i = '')
new(i)
end
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Instance Method Details
#aminoacid_one_letter_to_full_name(i) ⇒ Object
#
aminoacid_one_letter_to_full_name
#
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 129
def aminoacid_one_letter_to_full_name(i)
result = @dataset_one_letter_to_full_name[i].dup
result
end
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#ask_the_question ⇒ Object
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 137
def ask_the_question
e rev+'The three-letter aminoacid `'+sfancy(@key)+rev+
'` stands for which aminoacid?'
sleep SLEEP_FOR_THIS_AMOUNT
reveal_the_answer
end
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#determine_keys ⇒ Object
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 78
def determine_keys
@keys = @dataset.keys
end
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 94
def input?
@input
end
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#reset ⇒ Object
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 56
def reset
super()
@namespace = NAMESPACE
@dataset_one_letter_to_full_name = YAML.load_file(
ONE_LETTER_TO_FULL_NAME
).invert
@dataset = YAML.load_file(FILE_AMINOACIDS_THREE_TO_ONE)
determine_keys
end
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#reveal_the_answer ⇒ Object
#
reveal_the_answer (answer tag)
#
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 112
def reveal_the_answer
full_name_of_the_aminoacid = aminoacid_one_letter_to_full_name(@answer)
if full_name_of_the_aminoacid.frozen?
full_name_of_the_aminoacid = full_name_of_the_aminoacid.dup
end
full_name_of_the_aminoacid.capitalize!
e
e ' '+slateblue(@answer)+rev+
' ('+
lightblue(full_name_of_the_aminoacid)+rev+
')'
e
end
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#run ⇒ Object
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 147
def run
select_key_and_answer
ask_the_question
end
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#select_key_and_answer ⇒ Object
#
select_key_and_answer
#
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 101
def select_key_and_answer
@key = @keys.sample
if @input and !@input.empty?
@key = @input
end
@answer = @dataset[@key]
end
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# File 'lib/bioroebe/misc/quiz/three_letter_to_aminoacid.rb', line 85
def set_input(i = '')
i = i.first if i.is_a? Array
i = i.to_s.dup
@input = i
end
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