Module: Bioroebe::GUI::LibUI::RandomSequence

Includes:
LibuiParadise::Extensions
Defined in:
lib/bioroebe/gui/libui/random_sequence/random_sequence.rb

Overview

Bioroebe::GUI::LibUI::RandomSequence

Constant Summary collapse

TITLE =
#

TITLE

#
'Random Sequence - for DNA, RNA and aminoacids'
HEIGHT =
#

HEIGHT

#
500

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.run ⇒ Object

#

Bioroebe::GUI::LibUI::RandomSequence.run

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 164

def self.run
  object = Object.new.dup
  object.extend(RandomSequence)
  object.reset_then_run
end

Instance Method Details

#aminoacid_sequence? ⇒ Boolean Also known as: sequence?, main_sequence?

#

aminoacid_sequence?

#

Returns:

  • (Boolean) 

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 87

def aminoacid_sequence?
  @entry_containing_the_sequence.text?.to_s
end

#create_skeleton ⇒ Object

#

create_skeleton (create tag)

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 62

def create_skeleton
  create_the_entries
  # ======================================================================= #
  # === @text_buffer
  # ======================================================================= #
  @text_buffer = ui_text_view
end

#create_the_entries ⇒ Object

#

create_the_entries

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 73

def create_the_entries
  # ======================================================================= #
  # === @entry_containing_the_sequence
  # ======================================================================= #
  @entry_containing_the_sequence = ui_entry
  # ======================================================================= #
  # === @entry_use_this_length
  # ======================================================================= #
  @entry_use_this_length = ui_entry(15)
end

#do_generate_a_random_sequence(n_aminoacids = :default) ⇒ Object

#

do_generate_a_random_sequence

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 134

def do_generate_a_random_sequence(
    n_aminoacids = :default
  )
  case n_aminoacids
  when nil, :default
    n_aminoacids = GENERATE_N_AMINOACIDS_BY_DEFAULT
  end
  n_aminoacids = n_aminoacids.to_s
  use_this_as_the_new_sequence = ::Bioroebe.create_random_aminoacids(n_aminoacids).to_s
  array1 = ::Bioroebe.return_array_of_common_aminoacids
  array2 = Bioroebe::CountAmountOfAminoacids.return_composition_hash(use_this_as_the_new_sequence).values.map(&:to_s)
  zipped = array1.zip(array2) # Zip it up with 0-values here.
  _ = ''.dup
  zipped.each {|a, b|
    _ << "#{a}: #{b}\n"
  }
  @text_buffer.set_text(_)
  @entry_containing_the_sequence.set_text(use_this_as_the_new_sequence)
end

#do_generate_a_random_sequence_using_the_value_from_the_proper_entry(i = n_aminoacids? ) ⇒ Object

#

do_generate_a_random_sequence_using_the_value_from_the_proper_entry

This variant will be guaranteed to use the value determined by the gtk entry.

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 125

def do_generate_a_random_sequence_using_the_value_from_the_proper_entry(
    i = n_aminoacids?
  )
  do_generate_a_random_sequence(i)
end

#initialize ⇒ Object

#

initialize

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 41

def initialize
  reset
end

#n_aminoacids? ⇒ Boolean

#

n_aminoacids?

#

Returns:

  • (Boolean) 

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 157

def n_aminoacids?
  @entry_use_this_length.text?.to_s
end

#reset ⇒ Object

#

reset

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 56

def reset
end

#reset_then_run ⇒ Object

#

reset_then_run

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 48

def reset_then_run
  reset
  run
end

#run ⇒ Object

#

run

#

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# File 'lib/bioroebe/gui/libui/random_sequence/random_sequence.rb', line 95

def run
  create_skeleton
  main_window = ui_margined_window(TITLE, 1200, HEIGHT, 15)
  outer_vbox = ui_padded_vbox
  outer_vbox.minimal(@entry_containing_the_sequence)
  button_generate_a_random_aminoacid_sequence = ui_button(
    'Generate a random aminoacid sequence'
  )
  button_generate_a_random_aminoacid_sequence.on_clicked {
    do_generate_a_random_sequence(n_aminoacids?)
  }
  outer_vbox.minimal(button_generate_a_random_aminoacid_sequence)
  outer_vbox.minimal(@entry_use_this_length)
  outer_vbox.minimal(
    ui_text(
      'Showing statistical information about the '\
      'assigned aminoacid sequence next'
    )
  )
  outer_vbox.maximal(@text_buffer)
  main_window.child = outer_vbox
  main_window.intelligent_exit
end