Module: Bioroebe::GUI::LibUI::DnaToAminoacidWidget

Includes:
LibuiParadise::Extensions
Defined in:
lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb

Class Method Summary collapse

Instance Method Summary collapse

Class Method Details

.run ⇒ Object

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Bioroebe::GUI::LibUI::DnaToAminoacidWidget.run

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 151

def self.run
  object = Object.new
  object.extend(DnaToAminoacidWidget)
  object.run_everything
end

Instance Method Details

#create_skeleton ⇒ Object

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create_skeleton

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 84

def create_skeleton
  create_the_entries
  # ======================================================================= #
  # === @combo_box
  # ======================================================================= #
  @combo_box = ui_combo_box(@array_available_codons)
  combobox_selected_callback = proc { |ptr|
    _ = UI.combobox_selected(ptr)
    result = @array_available_codons[_].to_s
    entry_for_the_codon_table?.set_text(result)
    nil
  }
  UI.combobox_on_selected(@combo_box, combobox_selected_callback, nil)
end

#create_the_entries ⇒ Object

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create_the_entries

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 77

def create_the_entries
  @entry_for_the_codon_table = ui_entry('Standard (Eukaryote)')
end

#do_trigger_a_conversion(entry1 = @entry1, entry2 = @entry2, entry_for_the_codon_table = @entry_for_the_codon_table) ⇒ Object

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do_trigger_a_conversion (trigger tag)

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 58

def do_trigger_a_conversion(
    entry1 = @entry1,
    entry2 = @entry2,
    entry_for_the_codon_table = @entry_for_the_codon_table
  )
  text1 = text?(entry1)
  aminoacid_sequence = ::Bioroebe.convert_dna_to_protein_sequence(
    text1,
    :default,
    Bioroebe::CodonTable.by_name(
      entry_for_the_codon_table.text?
    )
  )
  entry2.set_text(aminoacid_sequence.to_s)
end

#entry_for_the_codon_table? ⇒ Boolean

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entry_for_the_codon_table?

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Returns:

  • (Boolean) 

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 102

def entry_for_the_codon_table?
  @entry_for_the_codon_table
end

#initialize(run_already = true) ⇒ Object

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initialize

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 30

def initialize(
    run_already = true
  )
  reset
  run if run_already
end

#reset ⇒ Object

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reset (reset tag)

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 48

def reset
  # ======================================================================= #
  # === @array_available_codons
  # ======================================================================= #
  @array_available_codons = Bioroebe.available_codon_tables?
end

#run ⇒ Object

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run

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 109

def run
  create_skeleton
  main_window = ui_margined_window('DNA to Aminoacid converter', 1200, 200, 15)
  outer_vbox = ui_vbox
  hbox = ui_hbox
  hbox.add(text('DNA sequence'), 1)
  hbox.add(text('Aminoacid sequence'), 1)
  outer_vbox.maximal(hbox)

  hbox = ui_hbox
  @entry1 = ui_entry
  @entry2 = ui_entry
  hbox.maximal(@entry1)
  hbox.maximal(@entry2)
  outer_vbox.add(hbox, 1)

  button = ui_button('Trigger conversion')
  
  button.on_clicked {
    do_trigger_a_conversion(
      @entry1,
      @entry2,
      @entry_for_the_codon_table
    )
    0
  }
  outer_vbox.maximal(button)

  hbox = ui_hbox
  hbox.maximal(text('Codon table in use: '))
  hbox.maximal(@entry_for_the_codon_table)
  hbox.maximal(@combo_box)
  outer_vbox.maximal(hbox)

  main_window.child = outer_vbox
  main_window.control_show
  main_window.elegant_exit
end

#run_everything ⇒ Object

#

run_everything

#

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# File 'lib/bioroebe/gui/libui/dna_to_aminoacid_widget/dna_to_aminoacid_widget.rb', line 40

def run_everything
  reset
  run
end