Method: Bio::Blast.local

Defined in:
lib/bio/appl/blast.rb

.local(program, db, options = '', blastall = nil) ⇒ Object

This is a shortcut for Bio::Blast.new:

Bio::Blast.local(program, database, options)

is equivalent to

Bio::Blast.new(program, database, options, 'local')

Arguments:

  • program (required): ‘blastn’, ‘blastp’, ‘blastx’, ‘tblastn’ or ‘tblastx’

  • db (required): name of the local database

  • options: blastall options \

(see www.genome.jp/dbget-bin/show_man?blast2)

  • blastall: full path to blastall program (e.g. “/opt/bin/blastall”; DEFAULT: “blastall”)

Returns

Bio::Blast factory object



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# File 'lib/bio/appl/blast.rb', line 78

def self.local(program, db, options = '', blastall = nil)
  f = self.new(program, db, options, 'local')
  if blastall then
    f.blastall = blastall
  end
  f
end