Class: Bio::Blast::Report_tab
- Defined in:
- lib/bio/appl/blast/report.rb
Overview
NCBI BLAST tabular (-m 8) output parser. All methods are equal to Bio::Blast::Report. Only DELIMITER (and RS) is different.
Constant Summary collapse
- DELIMITER =
Delimter of each entry. Bio::FlatFile uses it.
RS = nil
Instance Attribute Summary
Attributes inherited from Report
#db, #iterations, #parameters, #program, #query_def, #query_id, #query_len, #reference, #reports, #version
Method Summary
Methods inherited from Report
#db_len, #db_num, #each_hit, #each_iteration, #eff_space, #entrez_query, #entropy, #expect, #filter, #gap_extend, #gap_open, #hits, #hsp_len, #inclusion, #initialize, #kappa, #lambda, #matrix, #message, #pattern, rexml, #sc_match, #sc_mismatch, #statistics, tab, xmlparser
Constructor Details
This class inherits a constructor from Bio::Blast::Report