Class: Bio::Ngs::Fastx::Trim

Inherits:

Object

• Object
• Bio::Ngs::Fastx::Trim

Includes:

Command::Wrapper

Defined in:

lib/bio/appl/ngs/fastx.rb

Overview

[-f N] = First base to keep. Default is 1 (=first base). [-l N] = Last base to keep. Default is entire read. [-t N] = Trim N nucleotides from the end of the read. '-t' can not be used with '-l' and '-f'. [-z] = Compress output with GZIP. [-i INFILE] = FASTA/Q input file. default is STDIN. [-o OUTFILE] = FASTA/Q output file. default is STDOUT.

Method Summary

Methods included from Command::Wrapper

#class_name, #default_options, included, #initialize, #normalize_params, #options, #options=, #output, #params, #params=, #path, #path=, #pipe_ahead, #pipe_ahead=, #pipe_ahead?, #program, #reset_params, #run, #sub_program, #thor_task, #to_cmd_ary, #use_aliases?