Class: Bio::Ngs::Bwa::Samse
- Inherits:
-
Object
- Object
- Bio::Ngs::Bwa::Samse
- Includes:
- Command::Wrapper
- Defined in:
- lib/bio/appl/ngs/bwa.rb
Overview
Usage: bwa samse [-n max_occ] [-f out.sam] [-r RG_line] <prefix> <in.sai> <in.fq>
Method Summary
Methods included from Command::Wrapper
#class_name, #default_options, included, #initialize, #normalize_params, #options, #options=, #output, #params, #params=, #path, #path=, #pipe_ahead, #pipe_ahead=, #pipe_ahead?, #program, #reset_params, #run, #sub_program, #thor_task, #to_cmd_ary, #use_aliases?