Class: Bio::Ngs::Bwa::Fastmap

Inherits:

Object

• Object
• Bio::Ngs::Bwa::Fastmap

Includes:

Command::Wrapper

Defined in:

lib/bio/appl/ngs/bwa.rb

Overview

Usage: bwa fastmap [-l minLen=17] [-w maxSaSize=20] <idxbase> <in.fq>

Method Summary

Methods included from Command::Wrapper

#class_name, #default_options, included, #initialize, #normalize_params, #options, #options=, #output, #params, #params=, #path, #path=, #pipe_ahead, #pipe_ahead=, #pipe_ahead?, #program, #reset_params, #run, #sub_program, #thor_task, #to_cmd_ary, #use_aliases?