Class: Bio::Ngs::Bcftools::View

Inherits:

Object

• Object
• Bio::Ngs::Bcftools::View

Includes:

Command::Wrapper

Defined in:

lib/bio/appl/ngs/bcftools.rb

Overview

-1 INT number of group-1 samples [0]

-C FLOAT  posterior constrast for LRT<FLOAT and P(ref|D)<0.5 [1]
-U INT    number of permutations for association testing (effective with -1) [0]
-X FLOAT  only perform permutations for P(chi^2)<FLOAT [0.01]

Method Summary

Methods included from Command::Wrapper

#class_name, #default_options, included, #initialize, #normalize_params, #options, #options=, #output, #params, #params=, #path, #path=, #pipe_ahead, #pipe_ahead=, #pipe_ahead?, #program, #reset_params, #run, #sub_program, #thor_task, #to_cmd_ary, #use_aliases?