bio-chembl

ChEMBL REST Web Service API client, parser and container classes.

REST API Client

    # Show a web service URI
    BioChEMBL::REST::ChEMBL_URI.compound("CHEMBL1")

    # GET the XML data of the ChEMBL ID CHEMBL1 
    api = BioChEMBL::REST.new
    api.compound("CHEMBL1")

Parser and container

    cpd = BioChEMBL::Compound.find("CHEMBL1")
    cpd.chemblId #=> "CHEMBL1"
    cpd.slimes

    ba = cpd.bioactivities

    assay = BioChEMBL::Assay.find("CHEMBL1217643")
    assay.bioactivities[0].target
    assay.bioactivities[0].parent_compound

Note: this software is under active development!

Installation

    gem install bio-chembl

Usage

    require 'bio-chembl'

The API doc is online. For more code examples see the test files in the source tree.

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/nakao/bio-chembl

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Todo list

BioChEMBL::Target.find_by_refesq method.
JSON output support (parser and address).
ChEMBL RDF support.
Local REST API server with local ChEMBL database.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at #bio-chembl