Module: Bio

Defined in:

lib/bio-alignment/pal2nal.rb,
lib/bio-alignment/rows.rb,
lib/bio-alignment/tree.rb,
lib/bio-alignment/state.rb,
lib/bio-alignment/coerce.rb,
lib/bio-alignment/bioruby.rb,
lib/bio-alignment/columns.rb,
lib/bio-alignment/elements.rb,
lib/bio-alignment/sequence.rb,
lib/bio-alignment/alignment.rb,
lib/bio-alignment/format/text.rb,
lib/bio-alignment/format/fasta.rb,
lib/bio-alignment/codonsequence.rb,
lib/bio-alignment/format/phylip.rb,
lib/bio-alignment/edit/edit_rows.rb,
lib/bio-alignment/edit/del_bridges.rb,
lib/bio-alignment/edit/edit_columns.rb,
lib/bio-alignment/edit/mask_islands.rb,
lib/bio-alignment/edit/tree_splitter.rb,
lib/bio-alignment/edit/del_short_sequences.rb,
lib/bio-alignment/edit/mask_serial_mutations.rb,
lib/bio-alignment/edit/del_non_informative_sequences.rb

Overview

pal2nal (protein alignment to nucleotide alignment) implementation in Ruby

Defined Under Namespace

Modules: BioAlignment Classes: Sequence, Tree