Module: BigSimon

Defined in:
lib/big_simon/utils.rb,
lib/big_simon/parsers.rb,
lib/big_simon/runners.rb,
lib/big_simon/version.rb,
lib/big_simon/pipeline.rb,
lib/big_simon.rb

Defined Under Namespace

Classes: Parsers, Pipeline, Runners, Utils

Constant Summary collapse

VERSION = 
"0.2.1"

"2018 Ryan Moore"
CONTACT = 
"[email protected]"
WEBSITE = 
"https://github.com/mooreryan/InteinFinder"
LICENSE = 
"GPLv3"
VERSION_BANNER = 
"  # Version:   v#{VERSION}
# Copyright: #{COPYRIGHT}
# Contact:   #{CONTACT}
# License:   #{LICENSE}"
ROOT = 
File.join __dir__, ".."
BIN = 
File.join ROOT, "vendor", "bin", "mac"
SPEC = 
File.join ROOT, "spec"
TEST_FILES = 
File.join SPEC, "test_files"
WISH =

Programs

File.join BIN, "WIsH"
VHM = 
File.join BIN, "vhm.py"
MUMMER = 
File.join BIN, "mummer"
RSCRIPT = 
"Rscript"
BLASTN = 
File.join BIN, "blastn"
MAKEBLASTDB = 
File.join BIN, "makeblastdb"
PRODIGAL = 
File.join BIN, "prodigal"