Class: WingenderTFClass::ProteinFamilyRecognizers::ByUniprotID

Inherits:
Object
  • Object
show all
Defined in:
lib/WingenderTFClass/motif_family_recognizer.rb

Instance Method Summary collapse

Constructor Details

#initialize(motif_family_recognizer_by_uniprot_ac, uniprot_acs_by_id) ⇒ ByUniprotID

Returns a new instance of ByUniprotID.



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# File 'lib/WingenderTFClass/motif_family_recognizer.rb', line 69

def initialize(motif_family_recognizer_by_uniprot_ac, uniprot_acs_by_id)
  @motif_family_recognizer_by_uniprot_ac = motif_family_recognizer_by_uniprot_ac
  @uniprot_acs_by_id = uniprot_acs_by_id
end

Instance Method Details

#subfamilies_by_multiple_uniprot_ids(uniprot_ids) ⇒ Object 



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# File 'lib/WingenderTFClass/motif_family_recognizer.rb', line 81

def subfamilies_by_multiple_uniprot_ids(uniprot_ids)
  uniprot_ids.flat_map{|uniprot_id|
    subfamilies_by_uniprot_id(uniprot_id)
  }.uniq
end

#subfamilies_by_uniprot_id(uniprot_id) ⇒ Object

In most cases Uniprot refers the only leaf, but in some cases it refers several leafs in different subtrees. So we return an array of subfamilies



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# File 'lib/WingenderTFClass/motif_family_recognizer.rb', line 76

def subfamilies_by_uniprot_id(uniprot_id)
  uniprot_acs = @uniprot_acs_by_id[uniprot_id]
  @motif_family_recognizer_by_uniprot_ac.subfamilies_by_multiple_uniprot_acs( uniprot_acs )
end