Class: SequenceServer::Routes
- Inherits:
-
Sinatra::Base
- Object
- Sinatra::Base
- SequenceServer::Routes
- Defined in:
- lib/sequenceserver/routes.rb
Overview
Controller.
Instance Method Summary collapse
-
#update_searchdata_from_job(searchdata) ⇒ Object
Get the query sequences, selected databases, and advanced params used.
Instance Method Details
#update_searchdata_from_job(searchdata) ⇒ Object
Get the query sequences, selected databases, and advanced params used.
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# File 'lib/sequenceserver/routes.rb', line 291 def update_searchdata_from_job(searchdata) job = fetch_job(params[:job_id]) return { error: 'Job not found' }.to_json if job.nil? return if job.imported_xml_file # Only read job.qfile if we are not going to use Database.retrieve. searchdata[:query] = File.read(job.qfile) unless params[:query] # Which databases to pre-select. searchdata[:preSelectedDbs] = job.databases # job.advanced may be nil in case of old jobs. In this case, we do not # override searchdata so that default advanced parameters can be applied. # Note that, job.advanced will be an empty string if a user deletes the # default advanced parameters from the advanced params input field. In # this case, we do want the advanced params input field to be empty when # the user hits the back button. Thus we do not test for empty string. method = job.method.to_sym if job.advanced && job.advanced != searchdata[:options][method][:default].join(' ') searchdata[:options] = searchdata[:options].deep_copy searchdata[:options][method]['last search'] = [job.advanced] end end |