Genfrag version 0.0.0.1

by Pjotr Prins and Trevor Wennblom
http://genfrag.rubyforge.org
(the "Rough Draught" release)

DESCRIPTION:

This is a development release. Few features are functional at this time.

Genfrag allows for rapid in-silico searching of fragments cut by different restriction enzymes in large nucleotide acid databases, followed by matching specificity adapters which allow a further data reduction when looking for differential expression of genes and markers.

USAGE:

This works

genfrag index -f example.fasta --re5 BstYI --re3 MseI
genfrag search -f example.fasta --re5 BstYI --re3 MseI --adapter5 tt

REQUIREMENTS:

• bioruby

• sqlite3-ruby

INSTALL:

• sudo gem install genfrag

LICENSE:

Copyright © 2009 Pjotr Prins and Trevor Wennblom

Distributed under the same terms as the Ruby License - see LICENSE.txt