Class: Bio::TMHMM

Inherits:
Object show all
Defined in:
lib/bio/appl/tmhmm/report.rb

Overview

TMHMM class for www.cbs.dtu.dk/services/TMHMM/

Defined Under Namespace

Classes: Report, TMH

Class Method Summary collapse

Class Method Details

.reports(data) ⇒ Object

Splits multiple reports into a report entry.



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# File 'lib/bio/appl/tmhmm/report.rb', line 25

def TMHMM.reports(data)
  entry     = []
  ent_state = ''
  data.each_line do |line|
    if /^\#/ =~ line
      if ent_state == 'next'
        ent_state = 'entry'
      elsif ent_state == 'tmh'
        ent_state = 'next'
      end
    else
      ent_state = 'tmh'
    end

    if ent_state != 'next'
      entry << line
    else
      if block_given?
        yield Bio::TMHMM::Report.new(entry)
      else
        Bio::TMHMM::Report.new(entry)
      end
      entry = [line]
    end
  end

  if block_given?
    yield Bio::TMHMM::Report.new(entry)
  else
    Bio::TMHMM::Report.new(entry)
  end
end