Class: Bio::PSORT

Inherits:

Object

• Object
• Bio::PSORT

Defined in:

lib/bio/appl/psort.rb,
lib/bio/appl/psort/report.rb

Overview

A client for PSORT WWW Server

A client for PSORT WWW Server for predicting protein subcellular localization.

PSORT family members,

1. PSORT

2. PSORT II

3. iPSORT

4. PSORT-B psort.org

5. WoLF-PSORT

References

• psort.hgc.jp/

Defined Under Namespace

Classes: CGIDriver, IPSORT, PSORT1, PSORT2, PSORTB, WoLF_PSORT

Constant Summary

ServerURI =

a Hash for PSORT official hosts:

Key      value (host)
-------  -----------------------
IMSUT    psort.ims.u-tokyo.ac.jp  
Okazaki  psort.nibb.ac.jp        
Peking   srs.pku.edu.cn:8088

{
  :IMSUT   => {
    :PSORT1 => URI.parse("http://psort.hgc.jp/cgi-bin/okumura.pl"),
    :PSORT2 => URI.parse("http://psort.hgc.jp/cgi-bin/runpsort.pl") },
  :Okazaki => {
    :PSORT1 => URI.parse("http://psort.nibb.ac.jp/cgi-bin/okumura.pl"),
    :PSORT2 => URI.parse("http://psort.nibb.ac.jp/cgi-bin/runpsort.pl") },
  :Peking  => {
    :PSORT1 => URI.parse("http:///src.pku.edu.cn:8088/cgi-bin/okumura.pl"),
    :PSORT2 => URI.parse("http://src.pku.edu.cn:8088/cgi-bin/runpsort.pl") },
}