bio-unichem

Build Status

BioRuby plugin for UniChem REST Web service.

REST API address ```ruby Bio::UniChem::REST::UniChem_URI.src_compound_id("CHEMBL12", "1", "2") #=> "http://www.ebi.ac.uk/unichem/rest/src_compound_id/CHEMBL12/1/2"

Bio::UniChem::REST::UniChem_URI.mapping("4", "1") #=> "http://www.ebi.ac.uk/unichem/rest/mapping/4/1" ```

Get Data ruby client = Bio::UniChem::REST.new result = client.src_compound_id("CHEMBL12", "1", "2") p result #=> [{"src_compound_id"=>"DB00829"}]

Get Data using Source ID by Short name ruby client = Bio::UniChem::REST.new result = client.src_compound_id("CHEMBL12", Bio::UniChem::Sources['chembl'].src_id, Bio::UniChem::Sources['drugbank'].src_id) p eresult #=> [{"src_compound_id"=>"DB00829"}]

Sources and Souece models list of sources ruby chembl = Bio::UniChem::Sources['chembl'] chembl.src_id #=> "1" chembl.short_name #=> "chembl" chembl.full_name #=> "ChEMBL"

The Ruby script bellow utilizes the Bio UniChem module ```ruby require 'bio-unichem'

## -------------------------- ## create client ... client = Bio::UniChem::REST.new

## -------------------------- ## get the data ... result = client.src_compound_id("CHEMBL12", Bio::UniChem::Sources["chembl"].src_id)

## -------------------------- ## print ... p result
```

Note: this software is under active development!

Installation

    gem install bio-unichem

Usage

    require 'bio-unichem'

The API doc is online. For more code examples see the test files in the source tree.

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/nakao/bio-unichem

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Cite

If you use this software, please cite one of

Biogems.info

This Biogem is published at #bio-unichem

Copyright

Copyright (c) 2013 Mitsuteru Nakao. See LICENSE.txt for further details.