Full description goes here
Note: this software is under active development!
In order to use the gem, you also need
sambamba tool installed (version >= 0.2.6).
If you use Debian, you can download a package for your architecture from github downloads.
Otherwise, you need to do the following:
- install DMD compiler
install Ragel finite state machine compiler
- On Mac OS X you can install homebrew package manager, then install dmd and ragel easily with
brew install dmd
brew install ragel
- On Arch Linux you can use pacman to install dmd and ragel
pacman -S dmd libphobos ragel
- clone sambamba repository and compile the tool
git clone https://github.com/lomereiter/sambamba.git
- place the executable file
build/sambambato somewhere in your $PATH, for example:
cp build/sambamba /usr/local/bin
The API doc is online. For more code examples see the test files in the source tree.
Project home page
Information on the source tree, documentation, examples, issues and how to contribute, see
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
If you use this software, please cite one of
- BioRuby: bioinformatics software for the Ruby programming language
- Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
This Biogem is published at #bio-sambamba
Copyright (c) 2012 Artem Tarasov. See LICENSE.txt for further details.