Module: Bio::Ngs

Defined in:

lib/bio/ngs/db.rb,
lib/bio/ngs/fs.rb,
lib/bio/ngs/utils.rb,
lib/bio/ngs/record.rb,
lib/bio/ngs/quality.rb,
lib/bio/appl/ngs/bwa.rb,
lib/bio/ngs/graphics.rb,
lib/bio/ngs/homology.rb,
lib/bio/ngs/ontology.rb,
lib/bio/ngs/converter.rb,
lib/bio/appl/ngs/blast.rb,
lib/bio/appl/ngs/fastx.rb,
lib/bio/appl/ngs/casava.rb,
lib/bio/appl/ngs/tophat.rb,
lib/bio/appl/ngs/bcftools.rb,
lib/bio/appl/ngs/samtools.rb,
lib/bio/appl/ngs/cufflinks.rb,
lib/bio/ngs/illumina/fastq.rb,
lib/bio/ngs/illumina/sample.rb,
lib/bio/appl/ngs/sff_extract.rb,
lib/bio/ngs/illumina/project.rb,
lib/bio/ngs/illumina/illumina.rb,
lib/bio/appl/ngs/bowtie-inspect.rb,
lib/bio/appl/ngs/cufflinks/gtf/gtf.rb,
lib/bio/appl/ngs/cufflinks/iterators.rb,
lib/bio/appl/ngs/cufflinks/gtf/gtf_parser.rb,
lib/bio/appl/ngs/cufflinks/gtf/transcript.rb,
bin/biongs

Defined Under Namespace

Modules: Bcftools, Bwa, Converter, Cufflinks, FS, Fastx, Illumina, Samtools Classes: Blast, BowtieInspect, CASAVA, Db, FastQuality, Graphics, Homology, Ontology, OntologyCollection, Record, Runner, SffExtract, Tophat, Utils

Constant Summary

LoadBaseTasks =

true

HISTORY_FILE =

history

Dir.pwd+"/.task-history.yml"