• Bio::Gadget

*Bio::Gadget* - Gadgets for bioinformatics

  • Installation

: gem install bio-gadget

  • Usage

To check all commands in this package,

: gthor help bio : gthor list bio

Currently available commands are

: bio : — : gthor bio:dedup # deduplicate fastq (via STDIN) : gthor bio:demlt BC POS # demultiplex fastq (via STDIN) by barcodes : gthor bio:fqxz # automatic (re)compression of *.fq(.gz|.bz2) files : gthor bio:qvstat QUAL # statistics of quality values in *.qual file : gthor bio:wigchr WIG CHR # extract wiggle track on specified chromosome

  • Contributing

  1. Fork it

  2. Create your feature branch (`git checkout -b my-new-feature`)

  3. (optional) Install gems (`bundle`)

  4. Add your feature

  5. Commit your changes (`git commit -am 'Added some feature'`)

  6. Push to the branch (`git push origin my-new-feature`)

  7. Create new Pull Request