bio-fastqc

A ruby parser for FastQC data.

Reqruirements

Ruby 2.0 or later

Installation

gem install bio-fastqc

Usage

require 'bio-fastqc'

# extract data from zipfile
zip_file = "/path/to/data_fastqc.zip"
data = Bio::FastQC::Data.read(zip_file)
parser = Bio::FastQC::Parser.new(data)
parser.summary

Parse FastQC data as json format by command line tool:

$ fastqc-util parse /path/to/data_fastqc.zip

Project home page

Information on the source tree, documentation, examples, issues and how to contribute, see

http://github.com/inutano/bioruby-fastqc

The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.

Cite

If you use this software, please cite one of

BioRuby: bioinformatics software for the Ruby programming language
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics

Biogems.info

This Biogem is published at (http://biogems.info/index.html#bio-fastqc)