Documentation for bio-ensembl (1.1.0)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

Top Level Namespace

A

Allele (Ensembl::Variation)
AlleleGroup (Ensembl::Variation)
AlleleGroupAllele (Ensembl::Variation)
Analysis (Ensembl::Core)
AnalysisDescription (Ensembl::Core)
AssemblyException (Ensembl::Core)
AssemblyLink (Ensembl::Core)
AssociateStudy (Ensembl::Variation)
AttribType (Ensembl::Variation)
AttribType (Ensembl::Core)

B

Base (ActiveRecord)
Base (Ensembl::DBRegistry)

C

Collection (Ensembl::Core)
CompressedGenotypeSingleBp (Ensembl::Variation)
ConsequenceMapping (Ensembl::Variation)
CoordSystem (Ensembl::Core)
Core (Ensembl)

D

DBConnection (Ensembl::Core)
DBConnection (Ensembl::Variation)
DBRegistry (Ensembl)
DensityFeature (Ensembl::Core)
DensityType (Ensembl::Core)
Dna (Ensembl::Core)
DnaAlignFeature (Ensembl::Core)
DummyDBConnection (Ensembl)

E

Ensembl
Exon (Ensembl::Core)
ExonStableId (Ensembl::Core)
ExonSupportingFeature (Ensembl::Core)
ExonTranscript (Ensembl::Core)
ExternalDb (Ensembl::Core)
ExternalSynonym (Ensembl::Core)

F

FailedDescription (Ensembl::Variation)
FailedVariation (Ensembl::Variation)
FeatureType (Ensembl::Variation)
FlankingSequence (Ensembl::Variation)

G

Gap (Ensembl::Core)
Gene (Ensembl::Core)
GeneAttrib (Ensembl::Core)
GeneStableId (Ensembl::Core)
GoXref (Ensembl::Core)

H

Httag (Ensembl::Variation)

I

IRB
Individual (Ensembl::Variation)
IndividualGenotypeMultipleBp (Ensembl::Variation)
IndividualPopulation (Ensembl::Variation)
IndividualType (Ensembl::Variation)
Intron (Ensembl::Core)

K

Karyotype (Ensembl::Core)

M

Map (Ensembl::Core)
Marker (Ensembl::Core)
MarkerFeature (Ensembl::Core)
MarkerMapLocation (Ensembl::Core)
MarkerSynonym (Ensembl::Core)
Meta (Ensembl::Variation)
Meta (Ensembl::Core)
MetaCoord (Ensembl::Core)
MetaCoord (Ensembl::Variation)
MiscAttrib (Ensembl::Core)
MiscFeature (Ensembl::Core)
MiscFeatureMiscSet (Ensembl::Core)
MiscSet (Ensembl::Core)

O

ObjectXref (Ensembl::Core)
OligoArray (Ensembl::Core)
OligoFeature (Ensembl::Core)
OligoProbe (Ensembl::Core)

P

Phenotype (Ensembl::Variation)
PolyphenPrediction (Ensembl::Variation)
Population (Ensembl::Variation)
PopulationGenotype (Ensembl::Variation)
PopulationStructure (Ensembl::Variation)
PredictionExon (Ensembl::Core)
PredictionTranscript (Ensembl::Core)
ProteinAlignFeature (Ensembl::Core)
ProteinFeature (Ensembl::Core)
ProteinInfo (Ensembl::Variation)
ProteinPosition (Ensembl::Variation)

R

ReadCoverage (Ensembl::Variation)
RegulatoryFactor (Ensembl::Core)
RegulatoryFeature (Ensembl::Core)
RepeatConsensus (Ensembl::Core)
RepeatFeature (Ensembl::Core)

S

Sample (Ensembl::Variation)
SampleSynonym (Ensembl::Variation)
SeqRegion (Ensembl::Core)
SeqRegion (Ensembl::Variation)
SeqRegionAttrib (Ensembl::Core)
Session (Ensembl)
SiftPrediction (Ensembl::Variation)
SimpleFeature (Ensembl::Core)
Slice (Ensembl::Core)
Sliceable (Ensembl::Core)
Source (Ensembl::Variation)
StructuralVariation (Ensembl::Variation)
Study (Ensembl::Variation)
SubsnpHandle (Ensembl::Variation)
SupportingStructuralVariation (Ensembl::Variation)

T

TaggedVariationFeature (Ensembl::Variation)
Transcript (Ensembl::Core)
TranscriptAttrib (Ensembl::Core)
TranscriptStableId (Ensembl::Core)
TranscriptSupportingFeature (Ensembl::Core)
TranscriptVariation (Ensembl::Variation)
Translation (Ensembl::Core)
TranslationAttrib (Ensembl::Core)
TranslationStableId (Ensembl::Core)

V

Variation (Ensembl)
Variation (Ensembl::Variation)
VariationAnnotation (Ensembl::Variation)
VariationFeature (Ensembl::Variation)
VariationGroup (Ensembl::Variation)
VariationGroupFeature (Ensembl::Variation)
VariationGroupVariation (Ensembl::Variation)
VariationSet (Ensembl::Variation)
VariationSetStructure (Ensembl::Variation)
VariationSetVariation (Ensembl::Variation)
VariationSynonym (Ensembl::Variation)

X

Xref (Ensembl::Core)