Documentation for bio-alignment (0.1.0)

Alphabetic Index

File Listing

README

Namespace Listing A-Z

A

AA (Bio::Sequence)
Alignment (Bio::BioAlignment)

B

Bio
BioAlignment (Bio)

C

Codon (Bio::BioAlignment)
CodonSequence (Bio::BioAlignment)
Coerce (Bio::BioAlignment)
Column (Bio::BioAlignment)
ColumnState (Bio::BioAlignment)
Columns (Bio::BioAlignment)

D

DelBridges (Bio::BioAlignment)
DelNonInformativeSequences (Bio::BioAlignment)
DelShortSequences (Bio::BioAlignment)
DeleteState (Bio::BioAlignment)

E

Element (Bio::BioAlignment)
ElementMaskedState (Bio::BioAlignment)
ElementState (Bio::BioAlignment)
Elements (Bio::BioAlignment)

F

FastaOutput (Bio::BioAlignment)

I

IslandElementState (Bio::BioAlignment::MaskIslands)

M

MarkColumns (Bio::BioAlignment)
MarkRows (Bio::BioAlignment)
MarkState (Bio::BioAlignment)
MaskIslands (Bio::BioAlignment)
MaskSerialMutations (Bio::BioAlignment)
MaskState (Bio::BioAlignment)

N

NA (Bio::Sequence)
Node (Bio::Tree)
Node (Bio::BioAlignment::Tree)

P

Pal2Nal (Bio::BioAlignment)
PhylipOutput (Bio::BioAlignment)

R

Row (Bio::BioAlignment)
RowState (Bio::BioAlignment)
Rows (Bio::BioAlignment)

S

Sequence (Bio::BioAlignment)
Sequence (Bio)
State (Bio::BioAlignment)

T

TextOutput (Bio::BioAlignment)
Tree (Bio::BioAlignment)
Tree (Bio)
TreeSplitter (Bio::BioAlignment)