Module: Bio::BioAlignment

Defined in:
lib/bio-alignment/bioruby.rb,
lib/bio-alignment/rows.rb,
lib/bio-alignment/tree.rb,
lib/bio-alignment/state.rb,
lib/bio-alignment/coerce.rb,
lib/bio-alignment/columns.rb,
lib/bio-alignment/pal2nal.rb,
lib/bio-alignment/elements.rb,
lib/bio-alignment/sequence.rb,
lib/bio-alignment/alignment.rb,
lib/bio-alignment/format/text.rb,
lib/bio-alignment/format/fasta.rb,
lib/bio-alignment/codonsequence.rb,
lib/bio-alignment/format/phylip.rb,
lib/bio-alignment/edit/edit_rows.rb,
lib/bio-alignment/edit/del_bridges.rb,
lib/bio-alignment/edit/edit_columns.rb,
lib/bio-alignment/edit/mask_islands.rb,
lib/bio-alignment/edit/tree_splitter.rb,
lib/bio-alignment/edit/del_short_sequences.rb,
lib/bio-alignment/edit/mask_serial_mutations.rb,
lib/bio-alignment/edit/del_non_informative_sequences.rb

Overview

Here we add a BioRuby converter

Defined Under Namespace

Modules: Coerce, Columns, DelBridges, DelNonInformativeSequences, DelShortSequences, DeleteState, FastaOutput, MarkColumns, MarkRows, MarkState, MaskIslands, MaskSerialMutations, MaskState, Pal2Nal, PhylipOutput, Rows, State, TextOutput, Tree, TreeSplitter Classes: Alignment, Codon, CodonSequence, Column, ColumnState, Element, ElementMaskedState, ElementState, Elements, Row, RowState, Sequence